[BioC] Is there a way of counting a miRNA binding sites in a target gene

[Sean Davis]

On Tue, Feb 9, 2010 at 11:39 AM,  <mauede at alice.it> wrote:
> Is it possible to query BiomaRt and get the number of binding sites of a miRNA with a target gene ?
> I believe the coordinates of each binding site can be extracted as well. Which attributes shall I provide to
> extract such information, if any ?

Hi, Maura.  Have you had a look at the Ensembl Mart web portal?  You
can start there to see what is available via biomaRt.  If you have
questions after taking a look, let us know.

Sean