[BioC] Problem with MAS5 calls on MoEx array

cstrato cstrato at aon.at
Mon Feb 15 21:00:10 CET 2010


Dear Peter,

I am glad to hear that you could finally install xps.

Thank you for mentioning the missing include file, so I have just 
uploaded "xps-1.6.4" to BioC.
It will probably take 2-3 days until you can download the new version 
using biocLite().

Please let me know if you have any further questions.

Best regards
Christian

Peter Saffrey wrote:
> cstrato wrote:
>> The problem turned out to be a missing "#include <cstdlib>" in some 
>> source files, which gcc-4.3.2 did accept, while gcc-4.4.1 is more 
>> restrictive. Thus I have uploaded a new version "xps-1.6.3" to BioC, 
>> which should solve the problem.
>>
>
> Yes, I tried the instructions you posted here:
>
> https://stat.ethz.ch/pipermail/bioconductor/2009-August/029192.html
>
> which essentially involving adding #include <cstdlib> in a few places, 
> and this made the package compile.
>
> I couldn't install your package with biocLite() because it kept 
> hitting the old version. If I install it from the tgz, I get:
>
> XPSPreProcessing.cxx:5821: error: call of overloaded 'abs(Int_t&)' is 
> ambiguous
>
> Adding the #include <cstdlib> line in XPSPreProcessing.cxx fixed the 
> problem, though - it now compiles with g++-4.4.1-4.
>
> Thanks,
>
> Peter
>



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