[BioC] IntegrOmics

[Hooiveld, Guido]

Hi Dick,

FYI: the R-package of IntegrOmics is available through CRAN:
http://cran.r-project.org/web/packages/integrOmics/index.html

G

------------------------------------------------ 
Guido Hooiveld, PhD 
Nutrition, Metabolism & Genomics Group
Division of Human Nutrition 
Wageningen University 
Biotechnion, Bomenweg 2 
NL-6703 HD Wageningen 
the Netherlands 
tel: (+)31 317 485788 
fax: (+)31 317 483342 
internet:   http://nutrigene.4t.com
email:      guido.hooiveld at wur.nl



> -----Original Message-----
> From: bioconductor-bounces at stat.math.ethz.ch 
> [mailto:bioconductor-bounces at stat.math.ethz.ch] On Behalf Of 
> Dick Beyer
> Sent: 22 February 2010 02:05
> To: Martin Morgan
> Cc: Bioconductor
> Subject: Re: [BioC] Bioconductor Digest, Vol 84, Issue 19
> 
> Hi Martin,
> 
> Thanks for the excellent pointer to PMA.  (Sorry about the 
> poor choice of subject lines.  Very nice of you to respond!)
> 
> Thanks very much,
> Dick
> **************************************************************
> *****************
> Richard P. Beyer, Ph.D.	University of Washington
> Tel.:(206) 616 7378	Env. & Occ. Health Sci. , Box 354695
> Fax: (206) 685 4696	4225 Roosevelt Way NE, # 100
>  			Seattle, WA 98105-6099
> http://depts.washington.edu/ceeh/ServiceCores/FC5/FC5.html
> http://staff.washington.edu/~dbeyer
> **************************************************************
> *****************
> 
> On Sat, 20 Feb 2010, Martin Morgan wrote:
> 
> > On 02/19/2010 11:51 AM, Dick Beyer wrote:
> >> I was wondering if anyone is working on OMICS integration?
> >> Specifically, integrating data from gene expression, 
> proteomics, and 
> >> metabolomics for the same samples.
> >>
> >> I know about integrOmics:
> >>
> >> KL Cao, I González, S Déjean, integrOmics: an R package to unravel 
> >> relationships between two omics datasets, BIOINFORMATICS 
> APPLICATIONS 
> >> NOTE Vol. 25 no. 21 2009, pages 2855-2856
> >>
> >> but that package is not yet available.
> >
> > Speaking a little out of my comfort zone, but
> >
> >  http://cran.r-project.org/web/packages/PMA/index.html
> >
> > as a statistical methodology seems well motivated.
> >
> > Martin
> >
> >>
> >> Thanks very much,
> >> Dick
> >> 
> *********************************************************************
> >> **********
> >>
> >> Richard P. Beyer, Ph.D.    University of Washington
> >> Tel.:(206) 616 7378    Env. & Occ. Health Sci. , Box 354695
> >> Fax: (206) 685 4696    4225 Roosevelt Way NE, # 100
> >>             Seattle, WA 98105-6099
> >> http://depts.washington.edu/ceeh/ServiceCores/FC5/FC5.html
> >> http://staff.washington.edu/~dbeyer
> >> 
> *********************************************************************
> >> **********
> >>
> >>
> >>
> >>
> >> _______________________________________________
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> >
> >
> > --
> > Martin Morgan
> > Computational Biology / Fred Hutchinson Cancer Research Center 1100 
> > Fairview Ave. N.
> > PO Box 19024 Seattle, WA 98109
> >
> > Location: Arnold Building M1 B861
> > Phone: (206) 667-2793
> >
>