[BioC] IntegrOmics

[Dick Beyer]

Hi Guido,

Thanks for the URL.  Much appreciated. Dick
*******************************************************************************
Richard P. Beyer, Ph.D.	University of Washington
Tel.:(206) 616 7378	Env. & Occ. Health Sci. , Box 354695
Fax: (206) 685 4696	4225 Roosevelt Way NE, # 100
 			Seattle, WA 98105-6099
http://depts.washington.edu/ceeh/ServiceCores/FC5/FC5.html
http://staff.washington.edu/~dbeyer
*******************************************************************************

On Mon, 22 Feb 2010, Hooiveld, Guido wrote:

>
> Hi Dick,
>
> FYI: the R-package of IntegrOmics is available through CRAN:
> http://cran.r-project.org/web/packages/integrOmics/index.html
>
> G
>
> ------------------------------------------------
> Guido Hooiveld, PhD
> Nutrition, Metabolism & Genomics Group
> Division of Human Nutrition
> Wageningen University
> Biotechnion, Bomenweg 2
> NL-6703 HD Wageningen
> the Netherlands
> tel: (+)31 317 485788
> fax: (+)31 317 483342
> internet:   http://nutrigene.4t.com
> email:      guido.hooiveld at wur.nl
>
>
>
>> -----Original Message-----
>> From: bioconductor-bounces at stat.math.ethz.ch
>> [mailto:bioconductor-bounces at stat.math.ethz.ch] On Behalf Of
>> Dick Beyer
>> Sent: 22 February 2010 02:05
>> To: Martin Morgan
>> Cc: Bioconductor
>> Subject: Re: [BioC] Bioconductor Digest, Vol 84, Issue 19
>>
>> Hi Martin,
>>
>> Thanks for the excellent pointer to PMA.  (Sorry about the
>> poor choice of subject lines.  Very nice of you to respond!)
>>
>> Thanks very much,
>> Dick
>> **************************************************************
>> *****************
>> Richard P. Beyer, Ph.D.	University of Washington
>> Tel.:(206) 616 7378	Env. & Occ. Health Sci. , Box 354695
>> Fax: (206) 685 4696	4225 Roosevelt Way NE, # 100
>>  			Seattle, WA 98105-6099
>> http://depts.washington.edu/ceeh/ServiceCores/FC5/FC5.html
>> http://staff.washington.edu/~dbeyer
>> **************************************************************
>> *****************
>>
>> On Sat, 20 Feb 2010, Martin Morgan wrote:
>>
>>> On 02/19/2010 11:51 AM, Dick Beyer wrote:
>>>> I was wondering if anyone is working on OMICS integration?
>>>> Specifically, integrating data from gene expression,
>> proteomics, and
>>>> metabolomics for the same samples.
>>>>
>>>> I know about integrOmics:
>>>>
>>>> KL Cao, I González, S Déjean, integrOmics: an R package to unravel
>>>> relationships between two omics datasets, BIOINFORMATICS
>> APPLICATIONS
>>>> NOTE Vol. 25 no. 21 2009, pages 2855-2856
>>>>
>>>> but that package is not yet available.
>>>
>>> Speaking a little out of my comfort zone, but
>>>
>>>  http://cran.r-project.org/web/packages/PMA/index.html
>>>
>>> as a statistical methodology seems well motivated.
>>>
>>> Martin
>>>
>>>>
>>>> Thanks very much,
>>>> Dick
>>>>
>> *********************************************************************
>>>> **********
>>>>
>>>> Richard P. Beyer, Ph.D.    University of Washington
>>>> Tel.:(206) 616 7378    Env. & Occ. Health Sci. , Box 354695
>>>> Fax: (206) 685 4696    4225 Roosevelt Way NE, # 100
>>>>             Seattle, WA 98105-6099
>>>> http://depts.washington.edu/ceeh/ServiceCores/FC5/FC5.html
>>>> http://staff.washington.edu/~dbeyer
>>>>
>> *********************************************************************
>>>> **********
>>>>
>>>>
>>>>
>>>>
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>>>
>>>
>>> --
>>> Martin Morgan
>>> Computational Biology / Fred Hutchinson Cancer Research Center 1100
>>> Fairview Ave. N.
>>> PO Box 19024 Seattle, WA 98109
>>>
>>> Location: Arnold Building M1 B861
>>> Phone: (206) 667-2793
>>>
>>
>
>