[BioC] Installing problems of Flow Cytometry on Ubuntu Karmic

[Martin Morgan]

Hi Philipp --

On 02/07/2010 02:19 PM, Philipp Meng wrote:
> Dear All,
> 
> 
> I experience installation problems of the Flow Cytometry Packages on
> Ubuntu Karmic 9.10.
> My R version is 2.9.2
> 
> I can only install parts of the packages mentioned on the following
> page:
> http://bioconductor.org/docs/workflows/flowoverview/
> 
> I always get errormessages like this one:
> ####begin error msg
>> biocLite("flowMerge")
> Using R version 2.9.2, biocinstall version 2.4.13.
> Installing Bioconductor version 2.4 packages:
> [1] "flowMerge"
> Please wait...
> 
> Warnung in install.packages(pkgs = pkgs, repos = repos, dependencies =
> dependencies,  :
>   argument 'lib' is missing: using '/usr/local/lib/R/site-library'
> Warnmeldung:
> In getDependencies(pkgs, dependencies, available, lib) :
>   package ‘flowMerge’ is not available
> ####end error msg

flowMerge wasn't introduced until Bioc 2.5 / R-2.10; you'll need to
update your R before being able to install flowMerge. To find out about
packages available for your release, visit http://bioconductor.org,
follow Software > Downloads and then Past BioC Releases on the left
navigation panel.

Martin

> 
> I really appreciate your help!
> Thanks in advance!
> 
> Greetings,
> 
> Philipp
> 
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-- 
Martin Morgan
Computational Biology / Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N.
PO Box 19024 Seattle, WA 98109

Location: Arnold Building M1 B861
Phone: (206) 667-2793