[BioC] link to KEGG

[Gilbert Feng]

Hi, Marcos

Please check attached sample pdf file. If that is what you want, you can use
GeneAnswers to do that. The essential input is a genelist with optional
values, like foldchange, p-value, etc. And GeneAnswers can run enrichment
test and draw a concept-gene network with a concept-gene cross table, if you
have an expression profile, to show how your genes are potentially connected
to KEGG pathways. You can find examples and codes at
http://www.bioconductor.org/packages/release/bioc/html/GeneAnswers.html

Also, this attached sample pdf file is interactively generated, which means
you can adjust the layout for your purpose.

Let me know if you have any question.

Thanks

Gilbert


On 2/4/10 9:39 AM, "Marcos Pinho" <pinho.microarray at gmail.com> wrote:

> Dear list,
> 
> I have search extensively old postings but could not find an easy
> explanation on how to link my gene list generated after a diferential
> expression analysis with limma to a kegg pathway analysis. Any help would be
> greatly appreciated. Please keep in mind that I am a molecular biologist
> that can navigate through R , but it is always a challenge, therefore
> details and or examples are very helpful!
> 
> cheers,