[BioC] GO terms

[Adrian Johnson]

Hi Heidi,
Thanks for quick reply.
It doesnt work for me. Although GOTERMS$"GO:ID" works.

I have all my GOIDs in a list, I want to get the terms for that IDs in
character vector.


> Term("GO:0006916")
Error in function (classes, fdef, mtable)  :
  unable to find an inherited method for function "Term", for
signature "character"

> GOTERM$"GO:0006916"
GOID: GO:0006916
Term: anti-apoptosis
Ontology: BP
Definition: A process which directly inhibits any of the steps required
    for cell death by apoptosis.
Synonym: apoptosis inhibitor activity

Using GOTERM, I dont know how to capture 'Term'. I cannot use a sapply
function over GOTERMS too.

-Adrian






On Mon, Feb 15, 2010 at 6:53 PM, Heidi Dvinge <heidi at ebi.ac.uk> wrote:
> Hello Adrian,
>
> if you just want the term and nothing else you can say e.g.
>
>> library(GO.db)
> Loading required package: AnnotationDbi
> Loading required package: Biobase
>
> Welcome to Bioconductor
>
>  Vignettes contain introductory material. To view, type
>  'openVignette()'. To cite Bioconductor, see
>  'citation("Biobase")' and for packages 'citation(pkgname)'.
>
> Loading required package: DBI
>> Term("GO:0006916")
>      GO:0006916
> "anti-apoptosis"
>
>
> HTH
> \Heidi
>> Dear Group,
>> Is there any function in GOstats or other packages,  that could give
>> term name given GO ID.
>>
>> I have the result from probeSetSummary. I want to pull the GO term
>> name along with GO term ID.
>>
>> Thanks
>> Adrian
>>
>> _______________________________________________
>> Bioconductor mailing list
>> Bioconductor at stat.math.ethz.ch
>> https://stat.ethz.ch/mailman/listinfo/bioconductor
>> Search the archives:
>> http://news.gmane.org/gmane.science.biology.informatics.conductor
>>
>
>
>