[BioC] link to KEGG

[Peter Robinson]

Marcos Pinho wrote:
> Dear list,
> 
> I have search extensively old postings but could not find an easy
> explanation on how to link my gene list generated after a diferential
> expression analysis with limma to a kegg pathway analysis. Any help would be
> greatly appreciated. Please keep in mind that I am a molecular biologist
> that can navigate through R , but it is always a challenge, therefore
> details and or examples are very helpful!
> 
> cheers,
> 


Have a look at the KEGGgraph package, the vignette has a complete 
example of how to do this.

cheers Peter


-- 
Dr. med. Peter N. Robinson, MSc.
Institut für Medizinische Genetik
Charité - Universitätsmedizin Berlin
Humboldt-Universität
Augustenburger Platz 1
13353 Berlin
Germany
voice: 49-30-450566042
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email: peter.robinson at charite.de
http://compbio.charite.de/
http://www.human-phenotype-ontology.org