[BioC] HTqPCR - how to read data file with multiple samples

[Heidi Dvinge]

Hello Marco,

this feature is not available in HTqPCR 1.1.0, the release version.  
If you use a newer version, available either from the BioConductor  
development repository or http://www.ebi.ac.uk/bertone/software.html  
they'll be a parameter n.data in readCtData().

NB: Technically this is for the R devel version, but at least on my  
computer it works with R-2.10.0.

HTH
\Heidi

On 16 Feb 2010, at 08:46, Marco Fabbri wrote:

> Hi,
>    I am trying ti import into HTqPCR a TLDA with two sample, I have
> seen a previous post but I ma not able to make it works, it
> recogniseas a single sample but I have a two samples.
>
> I have isntalled HTqPCR 1.1.o on a windows machine
>
>
> #  	Plate	Pos	Flag	Sample	Detector	Task	Ct
> 1	Control	A1	Passed	Sample01	Gene1	Endogenous Control	11.463166
> 2	Control	A2	Passed	Sample01	Gene2	Target	33.949196
> 3	Control	A3	Passed	Sample01	Gene3	Target	27.956657
> 4	Control	A4	Passed	Sample02	Gene1	Target	26.92745
> 5	Control	A5	Passed	Sample02	Gene2	Target	24.992647
> 6	Control	A6	Flagged	Sample02	Gene3	Target	11.280299
>
> An object of class "qPCRset"
> Size:  384 features, 1 samples
> Feature types:           Endogenous Control, Target
> Feature names:           CYP1A1-Hs00153120_m1 CYP1A1-Hs00153120_m1
> CYP1A1-Hs00153120_m1 ...
> Feature classes:
> Feature categories:      OK, Undetermined
> Sample names:            Documents and
> Settings/fabbrmc/Desktop/card1/card1 NA NA ...
>
>
> Thank you
>
> Marco
>
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