[BioC] HTqPCR - how to read data file with multiple samples
Marco Fabbri
fabbri.marco at gmail.com
Tue Feb 16 09:46:55 CET 2010
Hi,
I am trying ti import into HTqPCR a TLDA with two sample, I have
seen a previous post but I ma not able to make it works, it
recogniseas a single sample but I have a two samples.
I have isntalled HTqPCR 1.1.o on a windows machine
# Plate Pos Flag Sample Detector Task Ct
1 Control A1 Passed Sample01 Gene1 Endogenous Control 11.463166
2 Control A2 Passed Sample01 Gene2 Target 33.949196
3 Control A3 Passed Sample01 Gene3 Target 27.956657
4 Control A4 Passed Sample02 Gene1 Target 26.92745
5 Control A5 Passed Sample02 Gene2 Target 24.992647
6 Control A6 Flagged Sample02 Gene3 Target 11.280299
An object of class "qPCRset"
Size: 384 features, 1 samples
Feature types: Endogenous Control, Target
Feature names: CYP1A1-Hs00153120_m1 CYP1A1-Hs00153120_m1
CYP1A1-Hs00153120_m1 ...
Feature classes:
Feature categories: OK, Undetermined
Sample names: Documents and
Settings/fabbrmc/Desktop/card1/card1 NA NA ...
Thank you
Marco
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