[BioC] Hgu 133A HT arrays

[James W. MacDonald]

Hi Somnath,

somnath bandyopadhyay wrote:
> Hi there,
> 
> 
> 
> I am trying to analyze microarray data from Affymetrix GeneChip
> HT-HG_U133A Array and Affymetrix GeneChip HT-HG_U133A_EA Array
> platforms. Are there any bioconductor packages to perform QC on the
> chips, do the pre-processing and finally run the analysis on the
> data? Any help in this regard would be greatly appreciated.

For pre-processing:

http://bioconductor.org/docs/workflows/oligoarrays/

For analysis:

http://bioconductor.org/packages/release/DifferentialExpression.html

Best,

Jim




> 
> 
> 
> Thanks so much,
> 
> Somnath.
> 
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