[BioC] Installing problems of Flow Cytometry on Ubuntu Karmic

[Philipp Meng]

Hi Martin,

Thanks for your fast response. I updated R now to version 2.10.2 from
the repositories directly from the R project.
Now i can install flowMerge without problems. 
THANK YOU!
But still, iFlow is not installable. Does it need the development
version of R? Do you have an idea where i could get this?

Thanks,

Philipp

Am Sonntag, den 07.02.2010, 16:27 -0800 schrieb Martin Morgan:
> Hi Philipp --
> 
> On 02/07/2010 02:19 PM, Philipp Meng wrote:
> > Dear All,
> > 
> > 
> > I experience installation problems of the Flow Cytometry Packages on
> > Ubuntu Karmic 9.10.
> > My R version is 2.9.2
> > 
> > I can only install parts of the packages mentioned on the following
> > page:
> > http://bioconductor.org/docs/workflows/flowoverview/
> > 
> > I always get errormessages like this one:
> > ####begin error msg
> >> biocLite("flowMerge")
> > Using R version 2.9.2, biocinstall version 2.4.13.
> > Installing Bioconductor version 2.4 packages:
> > [1] "flowMerge"
> > Please wait...
> > 
> > Warnung in install.packages(pkgs = pkgs, repos = repos, dependencies =
> > dependencies,  :
> >   argument 'lib' is missing: using '/usr/local/lib/R/site-library'
> > Warnmeldung:
> > In getDependencies(pkgs, dependencies, available, lib) :
> >   package ‘flowMerge’ is not available
> > ####end error msg
> 
> flowMerge wasn't introduced until Bioc 2.5 / R-2.10; you'll need to
> update your R before being able to install flowMerge. To find out about
> packages available for your release, visit http://bioconductor.org,
> follow Software > Downloads and then Past BioC Releases on the left
> navigation panel.
> 
> Martin
> 
> > 
> > I really appreciate your help!
> > Thanks in advance!
> > 
> > Greetings,
> > 
> > Philipp
> > 
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> 
>