November 2005 Archives by author

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Starting: Tue Nov 1 02:33:09 CEST 2005
Ending: Wed Nov 30 23:52:27 CEST 2005
Messages: 392

• [BioC] repeated measures in limma?   michael watson (IAH-C)
• [BioC] repeated measures in limma?   rob foxall (IFR)
• [BioC] averaging replicates within arrays   alex lam (RI)
• [BioC] averaging replicates within arrays   alex lam (RI)
• [BioC] paired t test for siblings?   Naomi Altman
• [BioC] averaging replicates within arrays   Naomi Altman
• [BioC] S/N ratio in microarrays   Naomi Altman
• [BioC] | Correlation | > 1 (limma)   Naomi Altman
• [BioC] lmFit and block argument for technical replicates   Naomi Altman
• [BioC] | Correlation | > 1 (limma)   Naomi Altman
• [BioC] | Correlation | > 1 (limma)   Naomi Altman
• [BioC] Single Channel Analysis   Naomi Altman
• [BioC] repeated measures in limma?   Naomi Altman
• [BioC] Single Channel Analysis   Naomi Altman
• [BioC] [Limma] Correcting Dye swap effect   Naomi Altman
• [BioC] AffyBatch <-> exprSet   Igor Androv
• [BioC] Creating an object of class exprSet   Beatriz
• [BioC] lmFit simple design or contrast   Beatriz
• [BioC] Limma lmFit simple design or contrast   Beatriz
• [BioC] Limma lmFit simple design or contrast   Beatriz
• [BioC] lmFit simple design or contrast   Beatriz
• [BioC] lmFit simple design or contrast   Beatriz
• [BioC] Looking for HuEx-1_0-st-v2.cdf File   Natalia Becker
• [BioC] Looking for HuEx-1_0-st-v2.cdf File   Natalia Becker
• [BioC] writing of /usr/lib/R   Henrik Bengtsson
• [BioC] Quality Images Website moved   Ben Bolstad
• [BioC] AffyPLM: MAplot   Ben Bolstad
• [BioC] Quality Images Website moved   Ben Bolstad
• [BioC] How to save jpegs of all MAplots of an affybatch   Ben Bolstad
• [BioC] getting absolute expression values for cDNA arrays   Irina Borodina
• [BioC] how to configure "pkgconfig"   Steven Buechler
• [BioC] normalization hgu133a and hgu133b: gcrma   Sabrina Carpentier
• [BioC] writing of /usr/lib/R   Benilton Carvalho
• [BioC] affy troubles   Benilton Carvalho
• [BioC] omit row dendrogram in heatmap   Lourdes Peña Castillo
• [BioC] limma 2.2.0 - decideTests heirarch/nestedF + BH correction , small bug   Ariel Chernomoretz
• [BioC] cross validation / bootstrap after classification   Kevin Coombes
• [BioC] [Bioc-devel] Draw volcanoplot in Limma   Giovanni Coppola
• [BioC] Estrogen data error in genelist   Thomas Curtis
• [BioC] attributes of SAM files   Sean Davis
• [BioC] Looking for R script to categorize genes using GO terms   Sean Davis
• [BioC] Help on Loading AgilentData into LIMMA   Sean Davis
• [BioC] converting data into logical matrix   Sean Davis
• [BioC] cross validation / bootstrap after classification   Sean Davis
• [BioC] Rdbi   Sean Davis
• [BioC] Help on Loading AgilentData into LIMMA   Sean Davis
• [BioC] problem with cuttree   Sean Davis
• [BioC] mapping kegg gene ids to probeset   Sean Davis
• [BioC] Low Ratio values in LIMMA   Sean Davis
• [BioC] S/N ratio in microarrays   Sean Davis
• [BioC] Gene Mapping on Chrosmosomes   Sean Davis
• [BioC] how to match the identifiers in multiple microarray data sets   Sean Davis
• [BioC] What to do with multiple probes?   Sean Davis
• [BioC] calculating replicate average in exprs(eset)   Sean Davis
• [BioC] What to do with multiple probes?   Sean Davis
• [BioC] Affy autodownload cdf problem   Sean Davis
• [BioC] Affy autodownload cdf problem   Sean Davis
• [BioC] Rdbi   Hrishikesh Deshmukh
• [BioC] Gene Mapping on Chrosmosomes   Hrishikesh Deshmukh
• [BioC] How to write "matchprobes" result(list of vector) to a table?   Lingsheng Dong
• [BioC] How to write "matchprobes" result(list of vector) to a table?   Lingsheng Dong
• [BioC] How to write "matchprobes" result(list of vector) to a table?   Lingsheng Dong
• [BioC] Small bug in function 'countskip.FASTA.entries' from package altcdfenvs   Lingsheng Dong
• [BioC] How to tell the "matchprobes" function to match PM probe only?   Lingsheng Dong
• [BioC] gcrma   Jenny Drnevich
• [BioC] E. coli problems: bimodality and gcrma   Jenny Drnevich
• [BioC] SimpleAffy: problem with Yeast Genome 2.0 Array   Jenny Drnevich
• [BioC] BiomaRt connection error   Steffen Durinck
• [BioC] Cel -> MAGE-ML   Steffen Durinck
• [BioC] How to install biomaRt package on Windows XP   Seth Falcon
• [BioC] Trouble querying pubmed on strings   Seth Falcon
• [BioC] Gene names   Seth Falcon
• [BioC] grep GOID, R problem or my problem?   Seth Falcon
• [BioC] Problem compiling hexbin with gcc 4.0.2   Seth Falcon
• [BioC] grep GOID, R problem or my problem?   Seth Falcon
• [BioC] how to configure "pkgconfig"   Seth Falcon
• [BioC] how to configure "pkgconfig"   Seth Falcon
• [BioC] BioC 1.6 Release unavailable   Seth Falcon
• [BioC] BioC 1.6 Release unavailable   Seth Falcon
• [BioC] In praise of name spaces (was: expresso still dying on list.files()--solved)   Seth Falcon
• [BioC] loading Bioconductor - error message   Seth Falcon
• [BioC] (no subject)   Seth Falcon
• [BioC] BioC v1.7 and R version?   Seth Falcon
• [BioC] normalization of colonCA data   Seth Falcon
• [BioC] why S-Score is not poppular like T-test pvalue and BH FDR , which is OK to use?   Seth Falcon
• [BioC] Problem with sp.between   Seth Falcon
• [BioC] MedlineR - Error in xmlRoot   Seth Falcon
• [BioC] Problem with sp.between   Seth Falcon
• [BioC] Affy autodownload cdf problem   Seth Falcon
• [BioC] Affy autodownload cdf problem   Seth Falcon
• [BioC] Low Ratio values in LIMMA   Greg Finak
• [BioC] lmFit and block argument for technical replicates   Carolyn Fitzsimmons
• [BioC] limma, spot and technical replicates   Carolyn Fitzsimmons
• [BioC] Gene Mapping on Chrosmosomes   Richard Friedman
• [BioC] Gene Mapping on Chrosmosomes   Furge, Kyle
• [BioC] proportianal hazard models   Margaret Gardiner-Garden
• [BioC] How to retrieve the genomic positions and /or orders of probes in the probe set   Robert Gentleman
• [BioC] Looking for R script to categorize genes using GO terms   Robert Gentleman
• [BioC] Gene Mapping on Chrosmosomes   Robert Gentleman
• [BioC] How to match Locus IDs with Gene Ontology IDs?   Robert Gentleman
• [BioC] What to do with multiple probes?   Robert Gentleman
• [BioC] normexp background correction   Edoardo Giacopuzzi
• [BioC] Draw volcanoplot in Limma   Edoardo Giacopuzzi
• [BioC] MACAT gene list. Over and under expressed   Giulio Di Giovanni
• [BioC] How to save jpegs of all MAplots of an affybatch   Giulio Di Giovanni
• [BioC] How to save jpegs of all MAplots of an affybatch   Giulio Di Giovanni
• [BioC] Again on heatmap clusters - dChip style, Pearson's distance. Which solutions ?   Giulio Di Giovanni
• [BioC] How to write a text file of a pamr.confusion table ?   Giulio Di Giovanni
• [BioC] How to write a text file of a pamr.confusion table ? - Solved   Giulio Di Giovanni
• [BioC] SimpleAffy: problem with Yeast Genome 2.0 Array   Earl F. Glynn
• [BioC] How to match Locus IDs with Gene Ontology IDs?   Earl F. Glynn
• [BioC] SAGE information   Alberto Goldoni
• [BioC] How to install biomaRt package on Windows XP   Wuming Gong
• [BioC] writing of /usr/lib/R   Michael Green
• [BioC] writing of /usr/lib/R   Michael Green
• [BioC] [AnnBuilder] How to use/load generated annotation packages   Rainer Grohmann
• [BioC] [AnnBuilder] How to use/load generated annotation packages   Rainer Grohmann
• [BioC] cl Vector   Kasper Daniel Hansen
• [BioC] Determining Synergy in MA expts   Kasper Daniel Hansen
• [BioC] AffyBatch <-> exprSet   Kasper Daniel Hansen
• [BioC] Problem compiling hexbin with gcc 4.0.2   Kasper Daniel Hansen
• [BioC] gcrma   Bettina Harr
• [BioC] Using limma with Applied Precision SoftWorx data   David Henderson
• [BioC] Problem compiling hexbin with gcc 4.0.2   David Henderson
• [BioC] Problem compiling hexbin with gcc 4.0.2   David Henderson
• [BioC] Problem compiling hexbin with gcc 4.0.2   David Henderson
• [BioC] GEO + SOFT files   Stephen Henderson
• [BioC] Problems checking code for "computeExprSet"   Stephen Henderson
• [BioC] qvalue package: Strange distribution of q values   Dr. Reinhard Hoffmann
• [BioC] Gene names   Wolfgang Huber
• [BioC] Which method best fit nylon single channel technology ?   Wolfgang Huber
• [BioC] Compendia   Wolfgang Huber
• [BioC] Order of probesets in an exprSet   Rafael A. Irizarry
• [BioC] LIMMA makeContrast one test and two controls   Robert Ivanek
• [BioC] Gene names   J.delasHeras at ed.ac.uk
• [BioC] Re-scaling MA plot Y axis in LimmaGUI?   J.delasHeras at ed.ac.uk
• [BioC] Order of probesets in an exprSet   Jamain, Adrien J
• [BioC] Problem with sp.between   Jamain, Adrien J
• [BioC] Problem with sp.between   Jamain, Adrien J
• [BioC] why S-Score is not poppular like T-test pvalue and BH FDR , which is OK to use?   Saurin Jani
• [BioC] why S-Score is not poppular like T-test pvalue and BH FDR , which is OK to use?   Saurin Jani
• [BioC] GEO + SOFT files   Saurin D. Jani
• [BioC] single-array error model for chip-on-chip experiment   Duhaime Johanne
• [BioC] Which method best fit nylon single channel technology ?   TEXTORIS Julien
• [BioC] Which method best fit nylon single channel technology ?   TEXTORIS Julien
• [BioC] AnnBuilder: use local gene2accession file   Andrej Kastrin
• [BioC] MedlineR - Error in xmlRoot   Andrej Kastrin
• [BioC] Gene names   Narendra Kaushik
• [BioC] why S-Score is not poppular like T-test pvalue and BH FDR , which is OK to use?   Richard Kennedy
• [BioC] (no subject)   Khan, Sohail
• [BioC] Creating an object of class exprSet   Khan, Sohail
• [BioC] problem with annaffy aafFunction function   Kimpel, Mark William
• [BioC] (no subject)   Kort, Eric
• [BioC] expresso dies on list.files   Kort, Eric
• [BioC] AffyBatch <-> exprSet   Kort, Eric
• [BioC] proportianal hazard models   Kort, Eric
• [BioC] BioC 1.6 Release unavailable   Kort, Eric
• [BioC] expresso still dying on list.files()   Kort, Eric
• [BioC] expresso still dying on list.files()--solved   Kort, Eric
• [BioC] What to do with multiple probes?   Vladimir Krasikov
• [BioC] limma, spot and technical replicates   STKH (Steen Krogsgaard)
• [BioC] [Limma] M value in contrast test   Marcelo Luiz de Laia
• [BioC] [Limma] M value in contrast test   Marcelo Luiz de Laia
• [BioC] Creating a CDFenv without cdf file   Nicholas Lewin-Koh
• [BioC] paired t test for siblings?   Li,Qinghong,ST.LOUIS,Molecular Biology
• [BioC] ReadAffy() for customized Affy chips   Li,Qinghong,ST.LOUIS,Molecular Biology
• [BioC] ReadAffy() for customized Affy chips   Li,Qinghong,ST.LOUIS,Molecular Biology
• [BioC] GCRMA with custom chips   Li,Qinghong,ST.LOUIS,Molecular Biology
• [BioC] limma's eBayes error: No residual degrees of freedom in linear model   Li,Qinghong,ST.LOUIS,Molecular Biology
• [BioC] limma's eBayes error: No residual degrees of freedom in linear model   Li,Qinghong,ST.LOUIS,Molecular Biology
• [BioC] writing of /usr/lib/R   Liaw, Andy
• [BioC] writing of /usr/lib/R   Liaw, Andy
• [BioC] MAplot in affyPLM library   Simon Lin
• [BioC] AffyPLM: MAplot   Simon Lin
• [BioC] AnnBuilder question: about how to retrieve information when using a built package?   Johan Lindberg
• [BioC] AnnBuilder problem?   Ting-Yuan Liu
• [BioC] beta7   Ting-Yuan Liu
• [BioC] BioC 1.6 Release unavailable   Ting-Yuan Liu
• [BioC] how to match the identifiers in multiple microarray data sets   Ting-Yuan Liu
• [BioC] Creating an object of class exprSet   Ting-Yuan Liu
• [BioC] [AnnBuilder] How to use/load generated annotation packages   Ting-Yuan Liu
• [BioC] Biobase/affy installation problem in linux   Ting-Yuan Liu
• [BioC] AnnBuilder question: about how to retrieve information when using a built package?   Ting-Yuan Liu
• [BioC] BioC 1.6 Release unavailable   Xuejun Liu
• [BioC] BioC 1.6 Release unavailable   Xuejun Liu
• [BioC] BioC 1.6 Release unavailable   Xuejun Liu
• [BioC] problem with hclust   Antoine Lucas
• [BioC] average linkage clustering in Eisen's Cluster vs. that in hclust   Antoine Lucas
• [BioC] hgu133atag-older version worked   James MacDonald
• [BioC] getGene in biomaRt package   James MacDonald
• [BioC] attributes of SAM files   James W. MacDonald
• [BioC] Gene names   James W. MacDonald
• [BioC] gcrma and custom chips   James W. MacDonald
• [BioC] grDevices under Linux   James W. MacDonald
• [BioC] expresso dies on list.files   James W. MacDonald
• [BioC] problem with annaffy aafFunction function   James W. MacDonald
• [BioC] writing of /usr/lib/R   James W. MacDonald
• [BioC] ReadAffy() for customized Affy chips   James W. MacDonald
• [BioC] Help regarding mas5 normalization   James W. MacDonald
• [BioC] Question about heatmap   James W. MacDonald
• [BioC] [Limma] M value in contrast test   James W. MacDonald
• [BioC] [Limma] M value in contrast test   James W. MacDonald
• [BioC] ReadAffy() for customized Affy chips   James W. MacDonald
• [BioC] GCRMA with custom chips   James W. MacDonald
• [BioC] BioC v1.7 and R version?   James W. MacDonald
• [BioC] Looking for HuEx-1_0-st-v2.cdf File   James W. MacDonald
• [BioC] How to save jpegs of all MAplots of an affybatch   James W. MacDonald
• [BioC] How to save jpegs of all MAplots of an affybatch   James W. MacDonald
• [BioC] How to write a text file of a pamr.confusion table ?   James W. MacDonald
• [BioC] mapping kegg gene ids to probeset   Dr.Mayhaus Manuel
• [BioC] Looking for R script to categorize genes using GO terms   Morten Mattingsdal
• [BioC] Gene Mapping on Chrosmosomes   Morten Mattingsdal
• [BioC] affymetrix pig annotation data   Morten Mattingsdal
• [BioC] BiomaRt connection error   Morten Mattingsdal
• [BioC] MedlineR - Error in xmlRoot   Morten Mattingsdal
• [BioC] MedlineR - Error in xmlRoot   Morten Mattingsdal
• [BioC] AnnBuilder problem?   Denise Mauldin
• [BioC] AnnBuilder problem?   Denise Mauldin
• [BioC] How to deal with technical replicates in limmaGUI?   Cecilia McGregor
• [BioC] (no subject)   Cecilia McGregor
• [BioC] limma, spot and technical replicates   Cecilia McGregor
• [BioC] limma Normalization question   Cecilia McGregor
• [BioC] limma Normalization question   Cecilia McGregor
• [BioC] SimpleAffy: problem with Yeast Genome 2.0 Array   Crispin Miller
• [BioC] GOstats/tkWidgets/gcrma conflict   Martin Morgan
• [BioC] p-value from geneSetTest in Limma   Na, Ren
• [BioC] question about the code in Lab 4 - Differential Expression and Linear Modeling using limma(Estrogen Data) on http://www.bioconductor.org/workshops/2005/BioC2005/labs/lab01/estrogen.html   Na, Ren
• [BioC] [Limma] Correcting Dye swap effect   Ron Ophir
• [BioC] Problems checking code for "computeExprSet"   Benjamin Otto
• [BioC] omit row dendrogram in heatmap   Georg Otto
• [BioC] calculating replicate average in exprs(eset)   Georg Otto
• [BioC] calculating replicate average in exprs(eset)   Georg Otto
• [BioC] Determining Synergy in MA expts   Lance Palmer
• [BioC] normexp backgroundCorrect problem   Lance Palmer
• [BioC] gpr one color   Paquet, Agnes
• [BioC] Small bug in function 'countskip.FASTA.entries' from package 'altcdfenvs'   Norman Pavelka
• [BioC] Small bug in function 'countskip.FASTA.entries' from package altcdfenvs   Norman Pavelka
• [BioC] Small bug in function 'countskip.FASTA.entries' from package altcdfenvs   Norman Pavelka
• [BioC] Small bug in function 'countskip.FASTA.entries' from package altcdfenvs   Norman Pavelka
• [BioC] Small bug in function 'countskip.FASTA.entries' from package altcdfenvs   Norman Pavelka
• [BioC] How to make a CDF package from an alternative CDF environment   Norman Pavelka
• [BioC] How to make a CDF package from a CDF environment   Norman Pavelka
• [BioC] Bioconductor on CD-ROM   Francois Pepin
• [BioC] Resourcerer warnings   Francois Pepin
• [BioC] Resourcerer warnings   Francois Pepin
• [BioC] BiomaRt connection error   Francois Pepin
• [BioC] gcrma and custom chips   Daniel Pick
• [BioC] GCRMA with custom chips   Daniel Pick
• [BioC] class comparison with SAM   Stefania Pilati
• [BioC] cross validation / bootstrap after classification   Heike Pospisil
• [BioC] cross validation / bootstrap after classification   Heike Pospisil
• [BioC] proportianal hazard models   Heike Pospisil
• [BioC] Bioinformatics Jobs at ArraDx   Proutski, Vitali
• [BioC] Help regarding mas5 normalization   Nayeem Quayum
• [BioC] writing of /usr/lib/R   Adaikalavan Ramasamy
• [BioC] SAGE information   Adaikalavan Ramasamy
• [BioC] Determining Synergy in MA expts   Adaikalavan Ramasamy
• [BioC] averaging replicates within arrays   Adaikalavan Ramasamy
• [BioC] Help regarding mas5 normalization   Adaikalavan Ramasamy
• [BioC] Again on heatmap clusters - dChip style, Pearson's distance. Which solutions ?   Adaikalavan Ramasamy
• [BioC] why S-Score is not poppular like T-test pvalue and BH FDR , which is OK to use?   Adaikalavan Ramasamy
• [BioC] Limma toptable question   Adaikalavan Ramasamy
• [BioC] Fwd: Statistical Computing Position   A.J. Rossini
• [BioC] Quality Images Website moved   David Ruau
• [BioC] Quality Images Website moved   David Ruau
• [BioC] Estrogen data error in genelist   Keith Satterley
• [BioC] Re-scaling MA plot Y axis in LimmaGUI?   Keith Satterley
• [BioC] duplicateCorrelation   Devin Scannell
• [BioC] duplicateCorrelation   Devin Scannell
• [BioC] HGU133atag_probe   Lana Schaffer
• [BioC] hgu133atag-older version worked   Lana Schaffer
• [BioC] Biobase/affy installation problem in linux   Anja Schiel
• [BioC] called genes after SAM anaylsis   Holger Schwender
• [BioC] FRD : package fdrame vs multtest   Nicolas Servant
• [BioC] writing of /usr/lib/R   Shi, Tao
• [BioC] BioC v1.7 and R version?   Stan Smiley
• [BioC] Help on Loading AgilentData into LIMMA   Gordon Smyth
• [BioC] Help on Loading AgilentData into LIMMA   Gordon Smyth
• [BioC] Help on Loading AgilentData into LIMMA   Gordon Smyth
• [BioC] averaging replicates within arrays   Gordon Smyth
• [BioC] normexp background correction   Gordon Smyth
• [BioC] Change to limma::eBayes   Gordon Smyth
• [BioC] | Correlation | > 1 (limma)   Gordon Smyth
• [BioC] | Correlation | > 1 (limma)   Gordon Smyth
• [BioC] normexp backgroundCorrect problem   Gordon Smyth
• [BioC] question about the code in Lab 4 - Differential Expression and Linear Modeling using limma(Estrogen Data)   Gordon Smyth
• [BioC] Single Channel Analysis   Gordon Smyth
• [BioC] limma's eBayes error: No residual degrees of freedom in linear model   Gordon Smyth
• [BioC] duplicateCorrelation   Gordon Smyth
• [BioC] limma's eBayes error: No residual degrees of freedom in linear model   Gordon Smyth
• [BioC] limma Normalization question   Gordon Smyth
• [BioC] limma 2.2.0 - decideTests heirarch/nestedF + BH correction , small bug   Gordon Smyth
• [BioC] Fwd: limma 2.2.0 - decideTests heirarch/nestedF + BH correction , small bug   Gordon Smyth
• [BioC] normexp background correction   Gordon K Smyth
• [BioC] Help on Loading AgilentData into LIMMA   Gordon K Smyth
• [BioC] [Bioc-devel] Draw volcanoplot in Limma   Gordon K Smyth
• [BioC] Limma two group layout; two approaches but different results   Gordon K Smyth
• [BioC] averaging replicates within arrays   Gordon K Smyth
• [BioC] averaging replicates within arrays   Gordon K Smyth
• [BioC] Design question in LIMMA   Gordon K Smyth
• [BioC] Rosetta vs Limma   Gordon K Smyth
• [BioC] About weight function for Agilent data   Gordon K Smyth
• [BioC] About weight function for Agilent data   Gordon K Smyth
• [BioC] limma's eBayes error: No residual degrees of freedom in linear model   Gordon K Smyth
• [BioC] [Limma] Correcting Dye swap effect   Gordon K Smyth
• [BioC] limma Normalization question   Gordon K Smyth
• [BioC] Bug in maNormNN   Tarca, Adi
• [BioC] affy troubles   YY Teo
• [BioC] Trouble querying pubmed on strings   Ken Termiso
• [BioC] loading Bioconductor - error message   Natalie Twine
• [BioC] Limma two group layout; two approaches but different results   Björn Usadel
• [BioC] Help on hclust function   Björn Usadel
• [BioC] normalization the expression values   Björn Usadel
• [BioC] lmFit simple design or contrast   Björn Usadel
• [BioC] How to write a text file of a pamr.confusion table ?   Björn Usadel
• [BioC] Training Program at Texas A&M   Marina Vannucci
• [BioC] Limma toptable question   Hua Weng
• [BioC] Gene names   Christopher Wilkinson
• [BioC] average linkage clustering in Eisen's Cluster vs. that in hclust   Wittner, Ben
• [BioC] Job openings in computing and statistics   Hulin Wu
• [BioC] BiomaRt connection error   Wu, Xiwei
• [BioC] BiomaRt connection error   Wu, Xiwei
• [BioC] BiomaRt connection error   Wu, Xiwei
• [BioC] gcrma   Zhijin (Jean) Wu
• [BioC] gcrma   Zhijin (Jean) Wu
• [BioC] affy-getPosXForCEL()   Yihuan Xu
• [BioC] Help on Loading AgilentData into LIMMA   Nataliya Yeremenko
• [BioC] Help on Loading AgilentData into LIMMA   Nataliya Yeremenko
• [BioC] Help on Loading AgilentData into LIMMA   Nataliya Yeremenko
• [BioC] Low Ratio values in LIMMA   Nataliya Yeremenko
• [BioC] Design question in LIMMA   Nataliya Yeremenko
• [BioC] Low Ratio values in LIMMA   Nataliya Yeremenko
• [BioC] Rosetta vs Limma   Nataliya Yeremenko
• [BioC] About weight function for Agilent data   Nataliya Yeremenko
• [BioC] About weight function for Agilent data   Nataliya Yeremenko
• [BioC] attributes of SAM files   Assa Yeroslaviz
• [BioC] cl Vector   Assa Yeroslaviz
• [BioC] converting data into logical matrix   Assa Yeroslaviz
• [BioC] grDevices under Linux   Assa Yeroslaviz
• [BioC] normalization the expression values   Assa Yeroslaviz
• [BioC] Gene names   John Zhang
• [BioC] problem with annaffy aafFunction function   John Zhang
• [BioC] affymetrix pig annotation data   John Zhang
• [BioC] AnnBuilder: use local gene2accession file   John Zhang
• [BioC] merging fit and MA objects   Guoneng Zhong
• [BioC] how to configure "pkgconfig"   shen bairong
• [BioC] how to configure "pkgconfig"   shen bairong
• [BioC] how to configure "pkgconfig"   shen bairong
• [BioC] how to configure "pkgconfig"   shen bairong
• [BioC] Help on hclust function   madhurima bhattacharjee
• [BioC] problem with hclust   madhurima bhattacharjee
• [BioC] problem with cuttree   madhurima bhattacharjee
• [BioC] Question about heatmap   Giovanni d'Ario
• [BioC] Looking for R script to categorize genes using GO terms   fhong at salk.edu
• [BioC] Looking for R script to categorize genes using GO terms   fhong at salk.edu
• [BioC] R script   fhong at salk.edu
• [BioC] grep GOID, R problem or my problem?   fhong at salk.edu
• [BioC] grep GOID, R problem or my problem?   fhong at salk.edu
• [BioC] beta7   kirk hammet
• [BioC] gpr one color   kirk hammet
• [BioC] how to match the identifiers in multiple microarray data sets   weinong han
• [BioC] how to match the identifiers in multiple microarray data sets   weinong han
• [BioC] how to combine the different expression values in Meta Analysis of microrrays   weinong han
• [BioC] how to combine the different expression values in Meta Analysis of microrrays   weinong han
• [BioC] how to export the selected data?   weinong han
• [BioC] What to do with multiple probes?   krasikov at science.uva.nl
• [BioC] Channel splitting problem   krasikov at science.uva.nl
• [BioC] What to do with multiple probes?   krasikov at science.uva.nl
• [BioC] called genes after SAM anaylsis   M a r c e l
• [BioC] How to write "matchprobes" result(list of vector) to a table?   lgautier at altern.org
• [BioC] Order of probesets in an exprSet   lgautier at altern.org
• [BioC] Creating a CDFenv without cdf file   lgautier at altern.org
• [BioC] How to write "matchprobes" result(list of vector) to a table?   lgautier at altern.org
• [BioC] writing of /usr/lib/R   lgautier at altern.org
• [BioC] Small bug in function 'countskip.FASTA.entries' from package altcdfenvs   lgautier at altern.org
• [BioC] Small bug in function 'countskip.FASTA.entries' from package 'altcdfenvs'   lgautier at altern.org
• [BioC] Small bug in function 'countskip.FASTA.entries' from package altcdfenvs   lgautier at altern.org
• [BioC] How to make a CDF package from an alternative CDF environment   lgautier at altern.org
• [BioC] GOstats/tkWidgets/gcrma conflict   mattia
• [BioC] S/N ratio in microarrays   narinder.singh at diagenic.com
• [BioC] normalization of colonCA data   pmt1rew at leeds.ac.uk
• [BioC] How to install biomaRt package on Windows XP   sdurinck
• [BioC] problems with biomaRt on Mac OS X (10.4.2 = Tiger)   sdurinck
• [BioC] getGene in biomaRt package   sdurinck
• [BioC] How to match Locus IDs with Gene Ontology IDs?   sdurinck at ebi.ac.uk
• [BioC] problem with hclust   shannon
• [BioC] problem with cuttree   shannon
• [BioC] Roomity.com v 1.5 is a web 2.01   shenanigans
• [BioC] How to retrieve the genomic positions and /or orders of probes in the probe set   szhan at uoguelph.ca
• [BioC] normexp (limma) failure?   bregje wertheim
• [BioC] normexp (limma) failure?   bregje wertheim
• [BioC] normexp (limma) failure?   bregje wertheim

Last message date: Wed Nov 30 23:52:27 CEST 2005
Archived on: Thu Dec 1 18:32:51 CEST 2005

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