[BioC] How to save jpegs of all MAplots of an affybatch
Giulio Di Giovanni
perimessaggini at hotmail.com
Wed Nov 23 17:09:37 CET 2005
Hi,
hoping is not a stupid question,
I would like to have a jpeg copy of all MAplots I created for my affybatch
object.
jpeg(file=paste(sampleNames(mysamples), anname,".jpeg", sep=""))
MAplot(mysamples)
dev.off()
doesn't work, it writes on the same file all the plots
and (ovbiously)
for(i in 1:n){
jpeg(file=paste(sampleNames(mysamples[,i]),"MAplot.jpeg", sep=""))
MAplot(mysamples[,i])
dev.off()
}
because to produce a MAplot on an affy chip, you need a median pseudo-chip
(i.e. at least two chips)
Does anyone have an idea/suggestion ?
Thanks a lot in advance
Giulio
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