[BioC] how to configure "pkgconfig"

[shen bairong]

Dear Seth:


Thanks for your kind help, I have successfully
installed Rgraphviz, by 
 "sudo gcc_select 3.3 " and rerun the insatll. 

(I also removed the /opt directory, which is a fink
darwin port version)

Best regards,
Bairong


--- Seth Falcon <sfalcon at fhcrc.org> wrote:

> On 14 Nov 2005, brshen_fudan at yahoo.com wrote:
> 
> > Dear Seth:
> >
> > Thanks for your help, Rgraphviz could find the
> > graphviz now, but I got another problem as
> follows,
> > wish to have your help.
> >
> > ld: can't locate file for: -lcc_dynamic
> > make: *** [Rgraphviz.so] Error 1
> > ERROR: compilation failed for package 'Rgraphviz'
> > ** Removing
> >
>
'/Library/Frameworks/R.framework/Versions/2.2/Resources/library/Rgraphviz'
> > ** Restoring previous
> >
>
'/Library/Frameworks/R.framework/Versions/2.2/Resources/library/Rgraphviz'
> 
> What do you get for gcc --version?
> If you don't see 3.3 then try:
> sudo gcc_select 3.3
> And rerun the install.
> 
> > The following is the detail.
> >
> >
> > 83-102-24-177:~/Desktop bairongshen$ export
> > PKG_CONFIG_PATH=/usr/local/lib/graphviz/pkgconfig
> > 83-102-24-177:~/Desktop bairongshen$  pkg-config
> > libgvc --modversion
> > 2.7.20051113.0540
> 
> This is not a supported graphviz version.  It _may_
> work and the
> cc_dynamic issue is unlikely to be related to this,
> but if things
> don't work after install, well, send us reports but
> be patient.
> 
> > 83-102-24-177:~/Desktop bairongshen$ R CMD INSTALL
> > Rgraphviz_1.9.1.tar.gz 
> > * Installing *source* package 'Rgraphviz' ...
> > checking for graphviz... checking for
> > dotneato-config... /opt/local/bin/dotneato-config
> > /opt/local/bin/dotneato-config
> 
> And this is quite odd because it looks like it *is*
> finding a
> dotneato-config which suggests you are picking up an
> older version of
> graphviz located in /opt/local/...
> 
> + seth
> 
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