[BioC] how to configure "pkgconfig"
sfalcon at fhcrc.org
Mon Nov 14 19:03:33 CET 2005
On 14 Nov 2005, brshen_fudan at yahoo.com wrote:
> Dear Seth:
> Thanks for your help, Rgraphviz could find the
> graphviz now, but I got another problem as follows,
> wish to have your help.
> ld: can't locate file for: -lcc_dynamic
> make: *** [Rgraphviz.so] Error 1
> ERROR: compilation failed for package 'Rgraphviz'
> ** Removing
> ** Restoring previous
What do you get for gcc --version?
If you don't see 3.3 then try:
sudo gcc_select 3.3
And rerun the install.
> The following is the detail.
> 83-102-24-177:~/Desktop bairongshen$ export
> 83-102-24-177:~/Desktop bairongshen$ pkg-config
> libgvc --modversion
This is not a supported graphviz version. It _may_ work and the
cc_dynamic issue is unlikely to be related to this, but if things
don't work after install, well, send us reports but be patient.
> 83-102-24-177:~/Desktop bairongshen$ R CMD INSTALL
> * Installing *source* package 'Rgraphviz' ...
> checking for graphviz... checking for
> dotneato-config... /opt/local/bin/dotneato-config
And this is quite odd because it looks like it *is* finding a
dotneato-config which suggests you are picking up an older version of
graphviz located in /opt/local/...
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