[BioC] gcrma

[Zhijin (Jean) Wu]

> methods(bg.correct)
[1] bg.correct.gcrma   bg.correct.LESN    bg.correct.mas
bg.correct.none   
[5] bg.correct.rma     bg.correct.rma2    bg.correct.shift

However, the gcrma functions have been updated in the new release.
You can do 

library(gcrma)
bg.correct.gcrma <- bg.adjust.rma

so that expresso can call the one defined in pacakge "gcrma".

Jean 

On Tue, 1 Nov 2005, Bettina Harr wrote:

> dear list,
> 
> I would like to decompose the function 'gcrma' into its individual 
> elements using the function 'expresso'. Does anyone know which of the 
> individual methods (i.e. background correction, pm correction, 
> normalization and summarization) I have to use in expresso to get gcrma 
> as a result?
> 
> Thanks
> 
> Tina
> 
> _________________________________________________
> 
> Bettina Harr
> Research Group Leader
> Abteilung fuer Evolutionsgenetik
> Institut fuer Genetik
> Universitaet Koeln
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