[BioC] why S-Score is not poppular like T-test pvalue and BH FDR , which is OK to use?

Seth Falcon sfalcon at fhcrc.org
Tue Nov 29 21:12:32 CET 2005


On 29 Nov 2005, saurin_jani at yahoo.com wrote:
> Dear BioC,
>
> Have any one used S-Score algorithm in order to
> analyze microarray data and extracted diff. expressed
> genes ? Or is it useful to use use...RMA ->  do t-test
> get p-valule  -> and do FDR (BH) --> extract diff.
> expressed genes?
>
> why S-score is not in much of use? like  T-test pvalue
> and BH FDR..which is OK to use?  

I haven't used S-score, but I believe a new Bioc package has just been
contributed that implements S-score.  Should be available in the devel
repository by the end of the week.

+ seth



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