[BioC] called genes after SAM anaylsis
M a r c e l
benco81 at hotmail.com
Wed Nov 2 16:33:11 CET 2005
Hi there!
My aim was to get about 100 called genes out of the sam analysis which I
have achieved doing this:
>sam9 <- sam(filtered, cl, delta=0.9, rand=2)
the delta of 0.9. gives me 120 Called genes:
>sam9
SAM Analysis for the Two-Class Unpaired Case Assuming Unequal Variances
Delta p0 False Called FDR
0.900 0.570 8.920 120.000 0.042
and I now want to get all the Called genes to perform further anaylsis
(heatmap and so on). how can I do that?
I´ve tried several things like:
called <- sam9$Called
but with no success.
Thanks to everyone!
cheers,
gregor
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