[BioC] grep GOID, R problem or my problem?

Seth Falcon sfalcon at fhcrc.org
Thu Nov 10 19:28:21 CET 2005


On 10 Nov 2005, fhong at salk.edu wrote:
> Hi Seth,
>
> I am very thankful for your reply. I did changed my program a little
> to avoid grep, and the problem seems being solved and the
> computational time has been very much shorten. 

That's good news!

> However, I still don't know what is going on with grep, maybe
> "value=TRUE" is not appropriate here?
>
> I attached the sample script ( the version still with "grep"). I run
> the script in the last block several time, the output of the last
> command line give me different numbers, sometimes 2490, sometimes
> 2492? Any idea?

Will have a look.

+ seth



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