[BioC] MedlineR - Error in xmlRoot

Andrej Kastrin andrej.kastrin at siol.net
Wed Nov 30 10:52:29 CET 2005


Dear all,

I think it's better to post here, instead on r-help. It's about MedlineR 
package in R; I receive the following error message when using 
"getAmatrix" (co-occurance matrix between terms in PubMed) command:

Error in xmlTreeParse(file = query, isURL = T) :
        error in creating parser for 
http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pubmed&rettype=count&term=GLB1+AND+ARSA
Error in xmlRoot(result.xml) : no applicable method for "xmlRoot"

Andrej



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