[BioC] affymetrix pig annotation data

John Zhang jzhang at jimmy.harvard.edu
Mon Nov 14 19:48:41 CET 2005

I do not think AnnBuilder has been configured/tested for handling pig chip 
annotation yet. The functions should work for human, mouse, and rat but may not 
work for other organisms.

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>Hello open-source spirits,
>Im trying to build an annotation data library for the Sus scrofa (common 
>pig) affymetrix chip: GeneChip® Porcine Genome Array
>but Im not very sucessful in doing so.. my error is
>Error in "baseFile<-"(`*tmp*`, value = 
>"C:\\DOCUME~1\\mortema\\LOCALS~1\\Temp\\Rtmp2376\\tempFile26288") :
>        no direct or inherited method for function 'baseFile<-' for this 
>and I dont know what this is trying so tell me. My imput is probe ID in 
>coloum 1 and genbank acc.nr in coloum 2.
>"Ssc.11.1.S1_at"    "NM_213802.1"
>and I have succesfully build packages before with human and mouse. But 
>this is my first go at pig.
>Does anyone have this library already build or can someone help me build 
>it ?
>(im deeply sorry if this is already listed in the metadata dir at 
>bioconductor. But cant find anything related to pig)
>Bioconductor mailing list
>Bioconductor at stat.math.ethz.ch

Jianhua Zhang
Department of Medical Oncology
Dana-Farber Cancer Institute
44 Binney Street
Boston, MA 02115-6084

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