[BioC] Problem compiling hexbin with gcc 4.0.2

David Henderson DNADave at insightful.com
Thu Nov 10 02:53:40 CET 2005


When using gfortran associated with gcc 4.0.2, I get the following error
when trying to install the hexbin package:

> biocLite("hexbin")

Running bioCLite version 0.1  with R version  2.2.0

Running biocinstall version 1.1  with R version  2.2.0
trying URL
'http://www.bioconductor.org/packages/bioc/1.7/src/contrib/hexbin_1.4.0.tar.gz'
Content type 'application/x-gzip' length 491520 bytes
opened URL
==================================================
downloaded 480Kb

* Installing *source* package 'hexbin' ...
** libs
gfortran   -fPIC  -O2 -c hbin.f -o hbin.o
 In file hbin.f:1

       subroutine hbin(x,y,cell,cnt,xcm,ycm, size, shape,
                                                       1
Error: Symbol 'shape' at (1) has no IMPLICIT type
make: *** [hbin.o] Error 1
ERROR: compilation failed for package 'hexbin'
** Removing '/usr/local/lib/R/library/hexbin'

The downloaded packages are in
        /tmp/Rtmpz13994/downloaded_packages
Warning message:
installation of package 'hexbin' had non-zero exit status in:
install.packages(pkgs = "hexbin", repos =
c("http://www.bioconductor.org/packages/bioc/1.7",

Thanks!!

Dave H
-- 
David A. Henderson, Ph.D.
Insightful Corporation
1700 Westlake Avenue North, Suite 500
Seattle, WA 98109-3044
Tel: 206-802-2307
Fax: 206-283-8691
DNADave at Insightful.Com
http://www.insightful.com



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