[BioC] class comparison with SAM

[Stefania Pilati]

Hello,
I am working on a dataset of nine  Affymetrix chip hybridization data, 
consisting in three time-points analized in triplicates. I am using SAM 
(multiclass) to identify differentially expressed genes and I realized 
that some genes have been discarded due to one "bad" value out of three, 
in the replicate. I woukd like to know if there is an alternative 
analysis able to "tolerate" this situation and label these genes as 
differentially expressed.

Thanks in advance,

-- 
Stefania Pilati, PhD

Istituto Agrario San Michele a/Adige
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