[BioC] MACAT gene list. Over and under expressed
Giulio Di Giovanni
perimessaggini at hotmail.com
Thu Nov 17 18:08:44 CET 2005
Hi people,
I'm using MACAT, and I would like to know how to split the final gene list
(the one obtained with evalScoring) in over and under expressed genes
for example with :
endMACAT = evalScoring(diffMACAT, class = MACATclass, chromosome = MACATchr,
nperms = 1000, kernel = kNN, kernelparams = evalkNNchr$best, cross.validate=
FALSE)
plotting it in html format with:
plot(endMACAT, output="html")
I obtain a list of 108 genes, related to chromosomic regions. I can see on
the graph that some are overxpressed and some underexpressed, but they are
mixed on the output table.... How can I obtain these two lists (if is
possible)... ?
I tried with evalScoring ouput values but no big results...
Thanks a lot in advance...
Giulio
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