January 2007 Archives by author

• Messages sorted by: [ thread ] [ subject ] [ date ]
• More info on this list...

Starting: Mon Jan 1 04:32:09 CET 2007
Ending: Wed Jan 31 23:38:52 CET 2007
Messages: 390

• [BioC] Delivery Status Notification (Failure)   Dr. D. P. Kreil (Boku)
• [BioC] Delivery Status Notification (Failure)   Dr. D. P. Kreil (Boku)
• [BioC] Ensuring two graphs have the same layout in Rgraphviz   michael watson (IAH-C)
• [BioC] Ensuring two graphs have the same layout in Rgraphviz   michael watson (IAH-C)
• [BioC] Ensuring two graphs have the same layout in Rgraphviz   michael watson (IAH-C)
• [BioC] Ensuring two graphs have the same layout in Rgraphviz   michael watson (IAH-C)
• [BioC] Ensuring two graphs have the same layout in Rgraphviz   michael watson (IAH-C)
• [BioC] from BAC name to list of genes in that BAC   Federico Abascal
• [BioC] from BAC name to list of genes in that BAC   Federico Abascal
• [BioC] Latest Stable Limma Version   Alejandro
• [BioC] Oneclass SAM analysis   Naomi Altman
• [BioC] saturated spots   Naomi Altman
• [BioC] Newbie needs help with exprset   Naomi Altman
• [BioC] Newbie needs help with exprset   Naomi Altman
• [BioC] Modified qc.affy code for chip type: soybeancdf   Alvord, Greg (DMS) [Contr]
• [BioC] simpleaffy and yeast2cdf problems   Alvord, Greg (DMS) [Contr]
• [BioC] Mouse.lumi problems   Lynn Amon
• [BioC] Illumina   Lynn M Amon
• [BioC] cosmo package - Tk requirement?   Oliver Bembom
• [BioC] continued dye effects, after normalization   Henrik Bengtsson
• [BioC] continued dye effects, after normalization   Henrik Bengtsson
• [BioC] saturated spots   Henrik Bengtsson
• [BioC] dChip v li.wong() (Was: Re: warnings from li wong summary method in expresso)   Henrik Bengtsson
• [BioC] from BAC name to list of genes in that BAC   Hilmar Berger
• [BioC] from BAC name to list of genes in that BAC   Hilmar Berger
• [BioC] goTools problem   Jorrit Boekel
• [BioC] Loading multiple Affy chips simultaneously   Paul Boutros
• [BioC] Loading multiple Affy chips simultaneously   Paul Boutros
• [BioC] Import GEO Soft format   Daniel Brewer
• [BioC] Format identification   Daniel Brewer
• [BioC] Limma: setting up printer information for agilent files   Daniel Brewer
• [BioC] Converting an Annbuilder object to a dataframe   Daniel Brewer
• [BioC] Converting an Annbuilder object to a dataframe   Daniel Brewer
• [BioC] Converting an Annbuilder object to a dataframe   Daniel Brewer
• [BioC] Converting an Annbuilder object to a dataframe   Daniel Brewer
• [BioC] Agilent 4100a probe annotation information   Daniel Brewer
• [BioC] Agilent 4100a probe annotation information   Daniel Brewer
• [BioC] Oneclass SAM analysis   Brooke-Powell, Elizabeth
• [BioC] Oneclass SAM analysis   Brooke-Powell, Elizabeth
• [BioC] Oneclass SAM analysis   Brooke-Powell, Elizabeth
• [BioC] Problem using biomaRt with local database   Alessandro Bruselles
• [BioC] Problem using biomaRt with local database   Alessandro Bruselles
• [BioC] Problem using biomaRt with local database   Alessandro Bruselles
• [BioC] Using ontoCompare with local GO database   Alessandro Bruselles
• [BioC] Problem with Rgraphviz on OSX with libgvc   Jarrett Byrnes
• [BioC] Problem with Rgraphviz on OSX with libgvc   Jarrett Byrnes
• [BioC] Rgraphviz problem   Stefano Calza
• [BioC] Rgraphviz problem   Stefano Calza
• [BioC] matchrpobes and HGU95A mismatch   Bao Cao
• [BioC] read customized affymetrix chip   Bao Cao
• [BioC] gcrma with bpmap file instead of cdf file   Baoqiang Cao
• [BioC] gcrma with bpmap file instead of cdf file   Baoqiang Cao
• [BioC] gcrma with bpmap file instead of cdf file   Baoqiang Cao
• [BioC] Arabidopsis tiling arrays   Benilton Carvalho
• [BioC] "oligo" crashes in windows XP   Benilton Carvalho
• [BioC] memory problem   Benilton Carvalho
• [BioC] Looking for R package for Nimblegen expression data   Benilton Carvalho
• [BioC] Looking for R package for Nimblegen expression data   Benilton Carvalho
• [BioC] Ensuring two graphs have the same layout in Rgraphviz   Tony Chiang
• [BioC] Fwd: Ensuring two graphs have the same layout in Rgraphviz   Tony Chiang
• [BioC] Ensuring two graphs have the same layout in Rgraphviz   Tony Chiang
• [BioC] Arabidopsis tiling arrays   Liam Childs
• [BioC] Time course cDNA two color array analysis   Ana Conesa
• [BioC] continued dye effects, after normalization   Kevin R. Coombes
• [BioC] from BAC name to list of genes in that BAC   Cui, Wenwu (NIH/NLM/NCBI) [C]
• [BioC] Reading hundrets of .cel files and QC thereof   Aedin Culhane
• [BioC] Bioconductor Digest, Vol 47, Issue 26   Manhong Dai
• [BioC] Format identification   Sean Davis
• [BioC] GOstats and custom annotation problem   Sean Davis
• [BioC] Retrieve new informations for the probes used in th microarray!   Sean Davis
• [BioC] Converting an Annbuilder object to a dataframe   Sean Davis
• [BioC] Converting an Annbuilder object to a dataframe   Sean Davis
• [BioC] Converting an Annbuilder object to a dataframe   Sean Davis
• [BioC] Agilent 4100a probe annotation information   Sean Davis
• [BioC] Agilent 4100a probe annotation information   Sean Davis
• [BioC] help with protein IPI annotation mappings   Sean Davis
• [BioC] snapCGH - processCGH   Sean Davis
• [BioC] imputing missing data for 70mer array platform, need advice   Sean Davis
• [BioC] from BAC name to list of genes in that BAC   Sean Davis
• [BioC] imputing missing data for 70mer array platform, need advice   Sean Davis
• [BioC] Reading hundrets of .cel files and QC thereof   Sean Davis
• [BioC] downloading GEO gds files   Sean Davis
• [BioC] Illumina   Sean Davis
• [BioC] Retrieve new informations for the probes used in th microarray!   Romain Desprat
• [BioC] mergeLevels (aCGH) vs. MergeLevels.new   Ramon Diaz-Uriarte
• [BioC] mergeLevels (aCGH) vs. MergeLevels.new   Ramon Diaz-Uriarte
• [BioC] cghMCR bug?   Ramon Diaz-Uriarte
• [BioC] cosmo package - Tk requirement?   Diggans, James C.
• [BioC] Plate or print-order effects - limma   Jenny Drnevich
• [BioC] Plate or print-order effects - limma   Jenny Drnevich
• [BioC] warnings....when treating duplicates   Jenny Drnevich
• [BioC] simpleaffy and yeast2cdf problems   Jenny Drnevich
• [BioC] warnings....when treating duplicates   Jenny Drnevich
• [BioC] continued dye effects, after normalization   Jenny Drnevich
• [BioC] continued dye effects, after normalization   Jenny Drnevich
• [BioC] limma - reading data from different Print files in cDNA   Jenny Drnevich
• [BioC] removing outlier/masked probes and gcrma   Jenny Drnevich
• [BioC] continued dye effects, after normalization   Jenny Drnevich
• [BioC] suggestions for plotPCA / pca.legend   Jenny Drnevich
• [BioC] questions on BioC's implementation of plier   Jenny Drnevich
• [BioC] suggestions for plotPCA / pca.legend   Jenny Drnevich
• [BioC] Mouse.lumi problems   Pan Du
• [BioC] Illumina   Mark Dunning
• [BioC] .Rnw file   Steffen Durinck
• [BioC] .Rnw file   Steffen Durinck
• [BioC] help with protein IPI annotation mappings   Steffen Durinck
• [BioC] help with protein IPI annotation mappings   Steffen Durinck
• [BioC] problem in biomaRt: getBM(output="list")   Steffen Durinck
• [BioC] problem in biomaRt: getBM(output="list")   Steffen Durinck
• [BioC] making ExpressionSet from ArrayExpress   Steffen Durinck
• [BioC] problem with biomaRt getHomolog function   Steffen Durinck
• [BioC] split-plot factorial design with limma?   Valeria Edefonti
• [BioC] gcrma with bpmap file instead of cdf file   Julia Engelmann
• [BioC] hist: log Intensity   Mohammad Esad-Djou
• [BioC] help in normalization cDNA arrays   Gustavo H. Esteves
• [BioC] Import GEO Soft format   João Fadista
• [BioC] Plate or print-order effects - limma   João Fadista
• [BioC] Limma - background correction   João Fadista
• [BioC] limma - duplicateCorrelation   João Fadista
• [BioC] snapCGH - processCGH   João Fadista
• [BioC] .Rnw file   Seth Falcon
• [BioC] Problem with Rgraphviz on OSX with libgvc   Seth Falcon
• [BioC] Problem with Rgraphviz on OSX with libgvc   Seth Falcon
• [BioC] Problem with Rgraphviz on OSX with libgvc   Seth Falcon
• [BioC] which universe in hyperGTest   Seth Falcon
• [BioC] Affymetrix Tiling Arrays and TilingArray package   Seth Falcon
• [BioC] hyperG over chromosome position...?   Seth Falcon
• [BioC] Rgraphviz problem   Seth Falcon
• [BioC] hyperGTest on proteomics data   Seth Falcon
• [BioC] Newbie needs help with exprset   Seth Falcon
• [BioC] GOstats hyperGTest question   Seth Falcon
• [BioC] GOstats hyperGTest question   Seth Falcon
• [BioC] Rgraphviz on Fedora Core 6   Seth Falcon
• [BioC] Rgraphviz on Fedora Core 6   Seth Falcon
• [BioC] AnnBuilder   Seth Falcon
• [BioC] Analysis with MBNI re-mapped (custom) CDF files   Seth Falcon
• [BioC] Rgraphviz installation mac os x intel   Gavai, Anand
• [BioC] .Rnw file   Robert Gentleman
• [BioC] GOstats and custom annotation problem   Robert Gentleman
• [BioC] Converting an Annbuilder object to a dataframe   Robert Gentleman
• [BioC] matchrpobes and HGU95A mismatch   Robert Gentleman
• [BioC] outdated version of 'affy' in biocLite ?   Robert Gentleman
• [BioC] hyperG over chromosome position...?   Robert Gentleman
• [BioC] hyperG over chromosome position...?   Robert Gentleman
• [BioC] Reading hundrets of .cel files and QC thereof   Jeff Gentry
• [BioC] imputing missing data for 70mer array platform, need advice   Betty Gilbert
• [BioC] what is the equivalent of normalize.qspline for 2 color arrays?   Betty Gilbert
• [BioC] R/Bioconductor Wrappers for NCBI eUtils (Entrez Programming Utilities)?   Earl F. Glynn
• [BioC] R/Bioconductor Wrappers for NCBI eUtils (Entrez Programming Utilities)?   Earl F. Glynn
• [BioC] Announcement: BioConductor Developer Workshop   Darlene Goldstein
• [BioC] R/Bioconductor Wrappers for NCBI eUtils (Entrez Programming Utilities)?   Gregor Gorjanc
• [BioC] GOstats and custom annotation problem   Dario Greco
• [BioC] GOstats and custom annotation problem   Dario Greco
• [BioC] GOstats and custom annotation problem   Dario Greco
• [BioC] GOstats and custom annotation problem   Dario Greco
• [BioC] GOstats and custom annotation problem   Dario Greco
• [BioC] hyperG over chromosome position...?   Dario Greco
• [BioC] hyperG over chromosome position...?   Dario Greco
• [BioC] hyperG over chromosome position...?   Dario Greco
• [BioC] Results file LIMMA   Andres Gutierrez
• [BioC] Problems with the size of the plots obtained with AffyPLM   Jordi Altirriba Gutiérrez
• [BioC] Problems with the size of the plots obtained with AffyPLM   Jordi Altirriba Gutiérrez
• [BioC] Problems with the size of the plots obtained with AffyPLM   Jordi Altirriba Gutiérrez
• [BioC] Problem with Rgraphviz on OSX with libgvc   Kasper Daniel Hansen
• [BioC] gcrma with bpmap file instead of cdf file   Kasper Daniel Hansen
• [BioC] localization of mm values in affybatch exprs matrix   Kasper Daniel Hansen
• [BioC] localization of mm values in affybatch exprs matrix   Kasper Daniel Hansen
• [BioC] job - computational biology position at Vertex Pharmaceuticals, Boston   Brian Hare
• [BioC] Limma - error when using duplicateCorrelation - Windows ver. Linux   Jakob Hedegaard
• [BioC] Newbie needs help with exprset   Sarah Highlander
• [BioC] Analysis with MBNI re-mapped (custom) CDF files   Hooiveld, Guido
• [BioC] .Rnw file   Wolfgang Huber
• [BioC] .Rnw file   Wolfgang Huber
• [BioC] normexp   Wolfgang Huber
• [BioC] making ExpressionSet from ArrayExpress   Wolfgang Huber
• [BioC] Why do these posts never include the compensation in them? was: RE: Bioin   Wolfgang Huber
• [BioC] Advanced Course in Cambridge 30.3.+1.4.   Wolfgang Huber
• [BioC] Quality Assessment   Wolfgang Huber
• [BioC] tiling array normalization   Wolfgang Huber
• [BioC] tiling array normalization   Wolfgang Huber
• [BioC] Ensuring two graphs have the same layout in Rgraphviz   Wolfgang Huber
• [BioC] Postions Available at Tufts Universtiy, Boston.   Lakshmanan Iyer
• [BioC] Oneclass SAM analysis   Jianping Jin
• [BioC] Oneclass SAM analysis   Jianping Jin
• [BioC] Oneclass SAM analysis   Jianping Jin
• [BioC] (no subject)   Qing Jing
• [BioC] reposTools   Qing Jing
• [BioC] AnnBuilder   Qing Jing
• [BioC] help with protein IPI annotation mappings   Kimpel, Mark William
• [BioC] help with protein IPI annotation mappings   Kimpel, Mark William
• [BioC] help with protein IPI annotation mappings   Kimpel, Mark William
• [BioC] typo in vennSelect help page   Kimpel, Mark William
• [BioC] hyperGTest on proteomics data   Kimpel, Mark William
• [BioC] hyperGTest on proteomics data   Kimpel, Mark William
• [BioC] limma vs. maanova for expirement with both contrasts and continuous variables   Kimpel, Mark William
• [BioC] problem with biomaRt getHomolog function   Kimpel, Mark William
• [BioC] problem with biomaRt getHomolog function   Kimpel, Mark William
• [BioC] problem with biomaRt getHomolog function   Kimpel, Mark William
• [BioC] possible spam alert   Kimpel, Mark William
• [BioC] ABPkgBuilder error: unable to find an inherited method for function "baseFile<-"   Martin Kircher
• [BioC] ABPkgBuilder error: unable to find an inherited method for function "baseFile<-"   Martin Kircher
• [BioC] saturated spots   Hans-Ulrich Klein
• [BioC] flagging spots in marray   Jay Konieczka
• [BioC] marray, maSub, and image()   Jay Konieczka
• [BioC] blast   Jay Konieczka
• [BioC] localization of mm values in affybatch exprs matrix   Karin Lagesen
• [BioC] gcrma and chip without mm values   Karin Lagesen
• [BioC] Rgraphviz problem   Marcelo Laia
• [BioC] Rgraphviz problem   Marcelo Laia
• [BioC] Time course cDNA two color array analysis   Marcelo Laia
• [BioC] Advice on how to compare two different sources on cDNA   Marcelo Laia
• [BioC] help in normalization cDNA arrays   Marcelo Laia
• [BioC] [limma] Error: nestedF method can't handle NA p-values   Marcelo Laia
• [BioC] Spot duplicate in timecourse package and "missing" values   Marcelo Laia
• [BioC] Time course cDNA two color array analysis   Marcelo Laia
• [BioC] aCGH.process help   Lee, Jason Thanh
• [BioC] aCGH data format   Lee, Jason Thanh
• [BioC] help with protein IPI annotation mappings   Paul Leo
• [BioC] Why do these posts never include the compensation in them? was: RE: Bioin   Matthew Lyon
• [BioC] Why do these posts never include the compensation in them? was: RE: B   Matthew Lyon
• [BioC] Response - difference between hgu95aprobe and hgu95acdf   James W. MacDonald
• [BioC] hgu133plus2 updated annotation package   James W. MacDonald
• [BioC] read.table(), then use affycoretools?   James W. MacDonald
• [BioC] read.table(), then use affycoretools?   James W. MacDonald
• [BioC] read.table(), then use affycoretools?   James W. MacDonald
• [BioC] typo in vennSelect help page   James W. MacDonald
• [BioC] Different RMA expression values in different BioC versions?   James W. MacDonald
• [BioC] Different RMA expression values in different BioC versions?   James W. MacDonald
• [BioC] hist: log Intensity   James W. MacDonald
• [BioC] which universe in hyperGTest   James W. MacDonald
• [BioC] which universe in hyperGTest   James W. MacDonald
• [BioC] hyperG over chromosome position...?   James W. MacDonald
• [BioC] which universe in hyperGTest   James W. MacDonald
• [BioC] removing outlier/masked probes and gcrma   James W. MacDonald
• [BioC] Error of pamr.knnimpute   James W. MacDonald
• [BioC] suggestions for plotPCA / pca.legend   James W. MacDonald
• [BioC] make.cdf.package   James W. MacDonald
• [BioC] about gene annotation   James W. MacDonald
• [BioC] localization of mm values in affybatch exprs matrix   James W. MacDonald
• [BioC] problems with library goCluster   James W. MacDonald
• [BioC] warnings from li wong summary method in expresso   James W. MacDonald
• [BioC] downloading GEO gds files   James W. MacDonald
• [BioC] Results file LIMMA   James W. MacDonald
• [BioC] (no subject)   James W. MacDonald
• [BioC] gcrma and chip without mm values   James W. MacDonald
• [BioC] how do you make a decoding dataframe affy2locusDF   James W. MacDonald
• [BioC] reposTools   James W. MacDonald
• [BioC] Analysis with MBNI re-mapped (custom) CDF files   James W. MacDonald
• [BioC] annaffy errors   James W. MacDonald
• [BioC] warnings from li wong summary method in expresso   James W. MacDonald
• [BioC] mergeLevels (aCGH) vs. MergeLevels.new   J-C. Marioni
• [BioC] Memory issues with limma and ImaGen file import   CV Markus
• [BioC] "oligo" crashes in windows XP   Morten Mattingsdal
• [BioC] "oligo" crashes in windows XP   Morten Mattingsdal
• [BioC] meaning of pfp in RankProd   Matthew McCormack
• [BioC] [Bioc] Removing outlier/masked probes and gcRMA   Amy Mikhail
• [BioC] beadarray: problem with reading in Bead Summary Data   P.D. Moerland
• [BioC] Nimbleexpress arrays   Saroj Mohapatra
• [BioC] MANOR/GLAD, problems getting data into the arrayCGH object   James Morris
• [BioC] DSC 2007 Additional Funding   Paul Murrell
• [BioC] rcor.test   Damion Colin Nero
• [BioC] Annals of Applied Statistics   Michael Newton
• [BioC] AnnBuilders paseData() doesn't recognize ACCs with underscore?   Benjamin Otto
• [BioC] AnnBuilders paseData() doesn't recognize ACCs withunderscore?   Benjamin Otto
• [BioC] AnnBuilders paseData() doesn't recognize ACCs with underscore?   Benjamin Otto
• [BioC] AnnBuilders paseData() doesn't recognize ACCs with underscore?   Benjamin Otto
• [BioC] problem in biomaRt: getBM(output="list")   Georg Otto
• [BioC] problem in biomaRt: getBM(output="list")   Georg Otto
• [BioC] ABPkgBuilder error: unable to find an inherited method for function "baseFile<-"   Herve Pages
• [BioC] Delivery Status Notification (Failure)   Herve Pages
• [BioC] Latest Stable Limma Version   Herve Pages
• [BioC] (no subject)   Herve Pages
• [BioC] goTools problem   Paquet, Agnes
• [BioC] Using ontoCompare with local GO database   Paquet, Agnes
• [BioC] Mouse.lumi problems   Anand C. Patel
• [BioC] post-doctoral fellowship in computational methods for systems genetics   Xinxia Peng
• [BioC] Looking for R package for Nimblegen expression data   Xinxia Peng
• [BioC] Looking for R package for Nimblegen expression data   Xinxia Peng
• [BioC] Looking for R package for Nimblegen expression data   Xinxia Peng
• [BioC] Agilent 4100a probe annotation information   Francois Pepin
• [BioC] hyperG over chromosome position...?   Francois Pepin
• [BioC] Reading hundrets of .cel files and QC thereof   Wolfgang Raffelsberger
• [BioC] warnings....when treating duplicates   Vinoy Kumar Ramachandran
• [BioC] problems with library goCluster   Caroline Reiff
• [BioC] how do you make a decoding dataframe affy2locusDF   Caroline Reiff
• [BioC] Limma - background correction   Matt Ritchie
• [BioC] Differentially Expressed Genes in Time Series with Replications   Peter Robinson
• [BioC] Pathway Interaction Database with BioC?   A.J. Rossini
• [BioC] limma - reading data from different Print files in cDNA   Dipen Sangurdekar
• [BioC] .Rnw file   Lana Schaffer
• [BioC] .Rnw file   Lana Schaffer
• [BioC] .Rnw file   Lana Schaffer
• [BioC] .Rnw file   Lana Schaffer
• [BioC] data set validation   Lana Schaffer
• [BioC] Quality Assessment   Lana Schaffer
• [BioC] Quality Assessment   Lana Schaffer
• [BioC] make.cdf.package   Lana Schaffer
• [BioC] make.cdf.package   Lana Schaffer
• [BioC] Normallization for focused chips   Lana Schaffer
• [BioC] tiling array normalization   Lana Schaffer
• [BioC] tiling array normalization   Lana Schaffer
• [BioC] tiling array normalization   Lana Schaffer
• [BioC] nested design in limma? -- revisit   Shi, Tao
• [BioC] Plate or print-order effects - limma   Gordon Smyth
• [BioC] Plate or print-order effects - limma   Gordon Smyth
• [BioC] continued dye effects, after normalization   Gordon Smyth
• [BioC] nested design in limma? -- revisit   Gordon Smyth
• [BioC] Limma - error when using duplicateCorrelation - Windows ver. Linux   Gordon Smyth
• [BioC] limma vs. maanova for expirement with both contrasts and continuous variables   Gordon Smyth
• [BioC] flagging spots in marray   Gordon K Smyth
• [BioC] Plate or print-order effects - limma   Gordon K Smyth
• [BioC] Plate or print-order effects - limma   Gordon K Smyth
• [BioC] Limma: setting up printer information for agilent   Gordon K Smyth
• [BioC] 2x2 factorial with dye effect, limma design   Gordon K Smyth
• [BioC] Normallization for focused chips   Gordon K Smyth
• [BioC] [limma] Error: nestedF method can't handle NA p-values   Gordon K Smyth
• [BioC] Results file LIMMA   Gordon K Smyth
• [BioC] Latest Stable Limma Version   Gordon K Smyth
• [BioC] removing outlier/masked probes and gcrma   Andrew Su
• [BioC] removing outlier/masked probes and gcrma   Andrew Su
• [BioC] simpleaffy and yeast2cdf problems   Dan Swan
• [BioC] problems reading Illumina files using BeadExplorer   Sylvain.Pradervand
• [BioC] Spot duplicate in timecourse package and "missing" values   Yu Chuan Tai
• [BioC] outdated version of 'affy' in biocLite ?   Talloen, Willem [PRDBE]
• [BioC] annotation packages version/date for sources   Ido M. Tamir
• [BioC] annaffy errors   Ido M. Tamir
• [BioC] normexp   Yolande Tra
• [BioC] simpleaffy segmentation fault   Sucheta Tripathy
• [BioC] downloading GEO gds files   Wall, Dennis Paul
• [BioC] Rgraphviz on Fedora Core 6   Byron Wallace
• [BioC] Rgraphviz on Fedora Core 6   Byron Wallace
• [BioC] statistical analyst   Wang, Hui
• [BioC] Different RMA expression values in different BioC versions?   Quanli Wang
• [BioC] Different RMA expression values in different BioC versions?   Quanli Wang
• [BioC] Different RMA expression values in different BioC versions?   Quanli Wang
• [BioC] How do you sort the differentially expressed genes?   De-Jian ZHAO
• [BioC] ABPkgBuilder error: unable to find an inherited method for function "baseFile<-"   John Zhang
• [BioC] AnnBuilders paseData() doesn't recognize ACCs with underscore?   John Zhang
• [BioC] AnnBuilders paseData() doesn't recognize ACCs with underscore?   John Zhang
• [BioC] cghMCR bug?   John Zhang
• [BioC] How to include dye effect in the model for separate channel analysis of two-color Data using limma   Weiyin Zhou
• [BioC] read.table(), then use affycoretools?   Weiyin Zhou
• [BioC] read.table(), then use affycoretools?   Weiyin Zhou
• [BioC] read.table(), then use affycoretools?   Weiyin Zhou
• [BioC] Does anyone have a recent annotation for hgu133plus2 ??   Marco Zucchelli
• [BioC] Format identification   lgautier at altern.org
• [BioC] removing outlier/masked probes and gcrma   lgautier at altern.org
• [BioC] localization of mm values in affybatch exprs matrix   lgautier at altern.org
• [BioC] DSPAM Re: Loading multiple Affy chips simultaneously   lgautier at altern.org
• [BioC] warnings from li wong summary method in expresso   lgautier at altern.org
• [BioC] Different RMA expression values in different BioC versions?   bmb at bmbolstad.com
• [BioC] using simpleaffy incorrectly, or is there a problem with the read.affy function?   k. brand
• [BioC] using simpleaffy incorrectly, or is there a problem with the read.affy function?   k. brand
• [BioC] Bioinformatician/Ontologist position in the Microarray Team at the EBI.   aedin culhane
• [BioC] saturated spots   J.delasHeras at ed.ac.uk
• [BioC] imputing missing data for 70mer array platform, need advice   J.delasHeras at ed.ac.uk
• [BioC] help in normalization cDNA arrays   J.delasHeras at ed.ac.uk
• [BioC] R fonts: character set (male/female symbols)   J.delasHeras at ed.ac.uk
• [BioC] outdated version of 'affy' in biocLite ?   hpages at fhcrc.org
• [BioC] data set validation   javier garcia-pintado
• [BioC] Error of pamr.knnimpute   washiot+1 at gmail.com
• [BioC] memory problem   yoo hoo
• [BioC] [COURSE ANNOUNCEMENT] CSAMA'07   stefano iacus
• [BioC] adding a color key scale to a DAG graph for Gene ontologies   Li.Long at isb-sib.ch
• [BioC] Rgraphviz problem   Li.Long at isb-sib.ch
• [BioC] Pathway Interaction Database with BioC?   Li.Long at isb-sib.ch
• [BioC] Rgraphviz on Fedora Core 6   Li.Long at isb-sib.ch
• [BioC] Rgraphviz on Fedora Core 6   Li.Long at isb-sib.ch
• [BioC] adding a color key scale to a DAG graph for Gene ontologies   lilong at isb-sib.ch
• [BioC] Affymetrix Tiling Arrays and TilingArray package   joseph
• [BioC] Problems with the size of the plots obtained with AffyPLM   J.Oosting at lumc.nl
• [BioC] Problems with the size of the plots obtained with AffyPLM   J.Oosting at lumc.nl
• [BioC] Normallization for focused chips   martin.schumacher at novartis.com
• [BioC] GOstats hyperGTest question   ivan.borozan at utoronto.ca
• [BioC] GOstats hyperGTest question   ivan.borozan at utoronto.ca
• [BioC] Plate or print-order effects - limma   hdvi at well.ox.ac.uk
• [BioC] about gene annotation   yanju
• [BioC] hgu133plus2 updated annotation package   marco zucchelli
• [BioC] adding a color key scale to a DAG graph for Gene ontologies   marco zucchelli
• [BioC] which universe in hyperGTest   marco zucchelli
• [BioC] which universe in hyperGTest   marco zucchelli
• [BioC] which universe in hyperGTest   marco zucchelli
• [BioC] warnings when using liwong summary method in affy   marco zucchelli
• [BioC] warnings from li wong summary method in expresso   marco zucchelli
• [BioC] warnings from li wong summary method in expresso   marco zucchelli
• [BioC] annotation packages version/date for sources   marco zucchelli
• [BioC] warnings from li wong summary method in expresso   marco zucchelli
• [BioC] warnings from li wong summary method in expresso   marco zucchelli
• [BioC] Reading hundrets of .cel files and QC thereof   Ingrid H. G. Østensen
• [BioC] Illumina   Ingrid H. G. Østensen

Last message date: Wed Jan 31 23:38:52 CET 2007
Archived on: Fri Feb 2 19:14:12 CET 2007

• Messages sorted by: [ thread ] [ subject ] [ date ]
• More info on this list...