[BioC] Limma - error when using duplicateCorrelation - Windows ver. Linux

[Jakob Hedegaard]

Hi List

When using duplicateCorrelation in Limma running under Linux I am receiving the following error: 

> cor <- duplicateCorrelation(MA, design=design, ndups=2, weights=MA$weights)
Error in La.svd(QtZ, nu = mq, nv = 0) : error code 1 from Lapack routine 'dgesdd'

Interestingly, there are no problems when analysing the same dataset in Limma running under Windows indicating a problem with the Linux version/installation....

- any suggestions would be appreciated!

Linux:
> sessionInfo()
Version 2.3.1 (2006-06-01)
x86_64-unknown-linux-gnu

attached base packages:
[1] "methods"   "stats"     "graphics"  "grDevices" "utils"     "datasets"
[7] "base"

other attached packages:
 statmod    limma
 "1.2.4" "2.7.10"
>

Windows:
> sessionInfo()
Version 2.3.1 (2006-06-01) 
i386-pc-mingw32 

attached base packages:
[1] "methods"   "stats"     "graphics"  "grDevices" "utils"     "datasets" 
[7] "base"     

other attached packages:
 statmod    limma 
 "1.2.4" "2.7.10" 
>



Best regards

Jakob Hedegaard
Project scientist


UNIVERSITY OF AARHUS
Faculty of Agricultural Sciences
Research Centre Foulum
Dept. of Genetics and Biotechnology
Blichers Allé 20, P.O. BOX 50
DK-8830 Tjele