[BioC] hyperG over chromosome position...?

[Francois Pepin]

Hi Dario,

It is possible to do it with the chromosomal band using Category. That
was the last part of Robert Gentleman's Category tutorial at BioC2006
(http://www.bioconductor.org/workshops/2006/BioC2006/labs/rgentleman/).

I'm not convinced if the chromosomal bands are the best partition to use
in that case, but it's a good starting point.

Francois

On Tue, 2007-01-16 at 07:43 -0800, Seth Falcon wrote:
> Hi Dario,
> 
> >> Dario Greco wrote:
> >>> hi all,
> >>> i would like to perform hyperGTest using the chromosome position   
> >>> (stored usually in pkgMAP environment).
> >>> how could it be possible?
> 
> Actually, this is on my list of things to add to the Category
> package.  If you, or anyone, wants to do some programming, take a look
> at how the KEGG and PFAM tests are implemented.  A first pass for
> chromosome position will be quite similar.
> 
> + seth
> 
> --
> Seth Falcon | Computational Biology | Fred Hutchinson Cancer Research Center
> http://bioconductor.org
> 
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