[BioC] Rgraphviz on Fedora Core 6

Byron Wallace Byron.Wallace at tufts.edu
Mon Jan 29 00:11:44 CET 2007


Hi all -- I'm having problems installing Rgraphviz on Fedora 6 core.
Below is the command line interaction, if anyone has any insight I
would greatly appreciate it. Thank you.

[CARMA at d-p-13-16 R-Install]$ su root R CMD INSTALL Rgraphviz_1.10.0.tar.gz
* Installing *source* package 'Rgraphviz' ...
checking for graphviz... checking for dotneato-config... not found
checking for pkg-config... /usr/bin/pkg-config
configure: creating ./config.status
config.status: creating src/Makevars
** libs
gcc -I/usr/lib/R/include -I/usr/lib/R/include -I/usr/include/graphviz
 -DGRAPHVIZGT_2_4 -I/usr/local/include    -fpic  -O3 -g -std=gnu99 -c
Rgraphviz.c -o Rgraphviz.o
In file included from common.h:29,
                 from Rgraphviz.c:1:
/usr/include/graphviz/gvcint.h:30: error: expected
specifier-qualifier-list before 'gvlayout_engine_t'
/usr/include/graphviz/gvcint.h:37: error: expected
specifier-qualifier-list before 'gvtextlayout_engine_t'
/usr/include/graphviz/gvcint.h:91: error: expected
specifier-qualifier-list before 'gvevent_key_binding_t'
Rgraphviz.c: In function 'getNodeLayouts':
Rgraphviz.c:801: error: 'struct <anonymous>' has no member named 'line'
Rgraphviz.c:802: error: 'struct <anonymous>' has no member named 'line'
Rgraphviz.c:804: error: 'struct <anonymous>' has no member named 'line'
Rgraphviz.c:808: error: 'struct <anonymous>' has no member named 'line'
Rgraphviz.c: In function 'getEdgeLocs':
Rgraphviz.c:930: error: 'struct <anonymous>' has no member named 'line'
Rgraphviz.c:941: error: 'struct <anonymous>' has no member named 'line'
Rgraphviz.c:945: error: 'struct <anonymous>' has no member named 'line'
Rgraphviz.c: In function 'Rgraphviz_graphvizVersion':
Rgraphviz.c:986: error: 'GVC_t' has no member named 'info'
make: *** [Rgraphviz.o] Error 1
chmod: cannot access `/home/CARMA/R/library/Rgraphviz/libs/*': No such
file or directory
ERROR: compilation failed for package 'Rgraphviz'
** Removing '/home/CARMA/R/library/Rgraphviz'


-- 
- Byron C. Wallace



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