[BioC] Rgraphviz on Fedora Core 6

[Li.Long at isb-sib.ch]

Hi,

My guess is that you are trying to install a very old Rgraphviz package
(bioconductor 1.8?) with the latest graphviz release...  I don't think it
has anything to do with Fedora 6 core.

You could try to install Rgraphviz-1.12.3 which has been updated to work
with latest graphviz release.  Or try to find a download for an old
graphviz, probably 2.8 or so.

Li



> Hi all -- I'm having problems installing Rgraphviz on Fedora 6 core.
> Below is the command line interaction, if anyone has any insight I
> would greatly appreciate it. Thank you.
>
> [CARMA at d-p-13-16 R-Install]$ su root R CMD INSTALL Rgraphviz_1.10.0.tar.gz
> * Installing *source* package 'Rgraphviz' ...
> checking for graphviz... checking for dotneato-config... not found
> checking for pkg-config... /usr/bin/pkg-config
> configure: creating ./config.status
> config.status: creating src/Makevars
> ** libs
> gcc -I/usr/lib/R/include -I/usr/lib/R/include -I/usr/include/graphviz
>  -DGRAPHVIZGT_2_4 -I/usr/local/include    -fpic  -O3 -g -std=gnu99 -c
> Rgraphviz.c -o Rgraphviz.o
> In file included from common.h:29,
>                  from Rgraphviz.c:1:
> /usr/include/graphviz/gvcint.h:30: error: expected
> specifier-qualifier-list before 'gvlayout_engine_t'
> /usr/include/graphviz/gvcint.h:37: error: expected
> specifier-qualifier-list before 'gvtextlayout_engine_t'
> /usr/include/graphviz/gvcint.h:91: error: expected
> specifier-qualifier-list before 'gvevent_key_binding_t'
> Rgraphviz.c: In function 'getNodeLayouts':
> Rgraphviz.c:801: error: 'struct <anonymous>' has no member named 'line'
> Rgraphviz.c:802: error: 'struct <anonymous>' has no member named 'line'
> Rgraphviz.c:804: error: 'struct <anonymous>' has no member named 'line'
> Rgraphviz.c:808: error: 'struct <anonymous>' has no member named 'line'
> Rgraphviz.c: In function 'getEdgeLocs':
> Rgraphviz.c:930: error: 'struct <anonymous>' has no member named 'line'
> Rgraphviz.c:941: error: 'struct <anonymous>' has no member named 'line'
> Rgraphviz.c:945: error: 'struct <anonymous>' has no member named 'line'
> Rgraphviz.c: In function 'Rgraphviz_graphvizVersion':
> Rgraphviz.c:986: error: 'GVC_t' has no member named 'info'
> make: *** [Rgraphviz.o] Error 1
> chmod: cannot access `/home/CARMA/R/library/Rgraphviz/libs/*': No such
> file or directory
> ERROR: compilation failed for package 'Rgraphviz'
> ** Removing '/home/CARMA/R/library/Rgraphviz'
>
>
> --
> - Byron C. Wallace
>
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