[BioC] about gene annotation

yanju yanju at liacs.nl
Mon Jan 22 18:15:39 CET 2007


Hello all,

I was tring to annotate zelbrafish microarray data using genbank 
function, but I got the following errors. Could you tell me what the 
problem is?

    library(XML)
    library(annotate)
    genbank("AW116961")


Entity: line 47: parser error : Opening and ending tag mismatch: link 
line 29 and head
    </head>
           ^
Entity: line 67: parser error : EntityRef: expecting ';'
ryBox" 
action="http://www.ncbi.nlm.nih.gov/entrez/utils/pmqty.fcgi?CMD=search&DB
........
........

 *** caught segfault ***
address 0xc0000000, cause 'memory not mapped'
Segmentation fault

but if i show the result using browser like 
genbank("AW116961",disp=c("browser")), it works fine.
what is the problem???

Thanks in advance

Regards,
Yanju



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