[BioC] Looking for R package for Nimblegen expression data

[Xinxia Peng]

OK. I will let you know what I get.

Thanks,
Xinxia  

-----Original Message-----
From: Benilton Carvalho [mailto:bcarvalh at jhsph.edu] 
Sent: Monday, January 29, 2007 10:00 AM
To: Xinxia Peng
Cc: bioconductor at stat.math.ethz.ch
Subject: Re: [BioC] Looking for R package for Nimblegen expression data

Yes, my bad not mentioning that... it's in the devel branch and it does
requires R-2.5.0.
b

On Jan 29, 2007, at 12:58 PM, Xinxia Peng wrote:

> Great. Is it the devel package? It seems that it needs R 2.5.0?
>
> Xinxia
>
> -----Original Message-----
> From: Benilton Carvalho [mailto:bcarvalh at jhsph.edu]
> Sent: Monday, January 29, 2007 9:49 AM
> To: Xinxia Peng
> Cc: bioconductor at stat.math.ethz.ch
> Subject: Re: [BioC] Looking for R package for Nimblegen expression 
> data
>
> The oligo package handles those, and you'll need to use the 
> makePlatformDesign package to build the data pkg required for 
> analysis.
>
> The following might be helpful:
>
> http://www.bioconductor.org/workshops/2006/BioC2006/labs/bcarvalho/
> tutorial-slides.pdf
>
> and contact me if you need any help regarding this, given that the 
> documentation is not ready.
>
> b
>
> On Jan 29, 2007, at 12:18 PM, Xinxia Peng wrote:
>
>> Hello,
>>
>> Could someone suggest a R package for handling Nimblegen expression 
>> arrays?
>>
>> Thanks,
>> Xinxia