[BioC] "oligo" crashes in windows XP

[Benilton Carvalho]

Hi Morten,

thanks for your feedback. I'll look into that.

Does R die right after you use read.celfiles() or it takes a little  
bit? How many CEL files are you reading in and what array?

Thanks,

b

On Jan 16, 2007, at 7:52 AM, Morten Mattingsdal wrote:

> Hello everyone,
>
> I'm learning to analyze Affymetrix SNP chips and having a go at the
> "oligo" package and the crlmm function.
> The problem is that R crashes when I try to read in the .CEL files.  
> Ive
> tried with both 2.4.0 and 2.5.0dev with the folowing command:
>
> files <- list.celfiles()
> snpFSet <- read.celfiles(files)
> * R Dies
>
> I'm aware that "oligo" is in development, I just want to let the
> developers to know that R crashes in windows.
>
> mvh
> morten
>
>
>
> SessionInfo()
>
> R version 2.5.0 Under development (unstable) (2007-01-13 r40470)
> i386-pc-mingw32
>
> locale:
> LC_COLLATE=Norwegian (Bokmål)_Norway.1252;LC_CTYPE=Norwegian
> (Bokmål)_Norway.1252;LC_MONETARY=Norwegian
> (Bokmål)_Norway.1252;LC_NUMERIC=C;LC_TIME=Norwegian (Bokmål)_Norway. 
> 1252
>
> attached base packages:
> [1] "splines"   "tools"     "stats"     "graphics"  "grDevices"
> "utils"     "datasets"  "methods"   "base"
>
> other attached packages:
>                 oligo BufferedMatrixMethods
> BufferedMatrix               RSQLite
> DBI                affyio               Biobase
>             "0.99.62"               "0.1.1"
> "0.1.27"              "0.4-18"              "0.1-12"
> "1.3.2"             "1.13.34"
>
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