[BioC] "oligo" crashes in windows XP

Morten Mattingsdal mortenm at inbox.com
Tue Jan 16 13:52:05 CET 2007


Hello everyone,

I'm learning to analyze Affymetrix SNP chips and having a go at the 
"oligo" package and the crlmm function.
The problem is that R crashes when I try to read in the .CEL files. Ive 
tried with both 2.4.0 and 2.5.0dev with the folowing command:

files <- list.celfiles()
snpFSet <- read.celfiles(files)
* R Dies

I'm aware that "oligo" is in development, I just want to let the 
developers to know that R crashes in windows.

mvh
morten



SessionInfo()

R version 2.5.0 Under development (unstable) (2007-01-13 r40470)
i386-pc-mingw32

locale:
LC_COLLATE=Norwegian (Bokmål)_Norway.1252;LC_CTYPE=Norwegian 
(Bokmål)_Norway.1252;LC_MONETARY=Norwegian 
(Bokmål)_Norway.1252;LC_NUMERIC=C;LC_TIME=Norwegian (Bokmål)_Norway.1252

attached base packages:
[1] "splines"   "tools"     "stats"     "graphics"  "grDevices" 
"utils"     "datasets"  "methods"   "base"    

other attached packages:
                oligo BufferedMatrixMethods        
BufferedMatrix               RSQLite                   
DBI                affyio               Biobase
            "0.99.62"               "0.1.1"              
"0.1.27"              "0.4-18"              "0.1-12"               
"1.3.2"             "1.13.34"



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