[BioC] from BAC name to list of genes in that BAC

[Hilmar Berger]

Hi,

mapping BAC clones to genomic positions and genes can be a time 
consuming process, especially if you have to do it manually.  If public 
databases can help you depends on the way the BAC clones are named. 
Could you give some example ?
Anyway, usually you should be able to get a table of BAC clones and 
other parameters (genomic location, (uni)gene id etc.) which might help 
in identifiying the genes in question.

Regards, Hilmar


Federico Abascal schrieb:

> Estimated colleagues,
> 
> I am working with CGH data. I have the name of the BAC clones and their
> chromosome locations. They correspond to OncoBAC arrays (?).
> Is there any way in bioconductor to determine which genes belong to each
> BAC clone?
> 
> Thank you in advance,
> Best,
> Federico
> 
> 
> PD: I am a newbie in R and Bioconductor
> 
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-- 

Hilmar Berger
Studienkoordinator
Institut für medizinische Informatik, Statistik und Epidemiologie
Universität Leipzig
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