[BioC] annaffy errors

[Ido M. Tamir]

Hi,

I am getting errors from annaffy when I try to use it
on "mgu74av2", depending on what columns I request/exclude
or call the function a second time:

>   anncols <- aaf.handler() #all!
>   andiff <- aafTableAnn(probeTop, "mgu74av2", anncols )
Error in `parent.env<-`(`*tmp*`, value = NULL) : 
	use of NULL environment is defunct
>  andiff <- aafTableAnn(probeTop, "mgu74av2", anncols )
Error in exists(num$GOID, GOTERM) : recursive default argument reference

In an old post I found this could be because of conflicting package versions.
I reinstalled  mgu74av2 and annaffy but this did not help.

Thank you very much in advance,
ido


> sessionInfo()
R version 2.4.1 (2006-12-18) 
x86_64-redhat-linux-gnu 


attached base packages:
[1] "splines"   "tools"     "stats"     "graphics"  "grDevices" "utils"    
[7] "datasets"  "methods"   "base"     

other attached packages:
      annaffy          KEGG            GO      mgu74av2 mgu74av2probe 
      "1.6.1"      "1.10.0"      "1.10.0"      "1.14.0"      "1.14.0" 
  mgu74av2cdf         limma  affyQCReport    simpleaffy    genefilter 
     "1.14.0"       "2.9.1"      "1.12.0"       "2.8.0"      "1.12.0" 
     survival         plier         gcrma   matchprobes   geneplotter 
       "2.30"       "1.4.0"       "2.6.0"       "1.6.0"      "1.12.0" 
     annotate          affy        affyio       Biobase 
     "1.12.1"      "1.12.2"       "1.0.0"      "1.12.2"