[BioC] ABPkgBuilder error: unable to find an inherited method for function "baseFile<-"
Martin Kircher
kirmar at mpi-inf.mpg.de
Tue Jan 16 14:19:45 CET 2007
Thanks for your help. The new version of AnnBuilder is not yet
available, but I now use a download from the SVN repository...
There are two small errors (at least my version does not accept it) in
the example given in the help file for ABPkgBuilder - nothing
significant, but some one may have problems with it...
ABPkgBuilder(baseName = file.path(myDir, "geneNMap"),
srcUrls = mySrcUrls, baseMapType = "gb",
otherSrc = otherMapping, pkgName = "myPkg",
pkgPath = myDir, organism = "Homo sapiens",
version = "1.1.0", makeXML = TRUE, author =
c(author = "myname", maintainer =
"myname at myemail.com"))
The "makeXML = TRUE" is not recognized by my version and it should be
author = c(authors = "myname", maintainer = "myname at myemail.com")).
Best regards! Martin
> sessionInfo()
R version 2.5.0 Under development (unstable) (2007-01-11 r40446)
x86_64-unknown-linux-gnu
locale:
C
attached base packages:
[1] "tools" "stats" "graphics" "grDevices" "utils" "datasets"
[7] "methods" "base"
other attached packages:
AnnBuilder annotate XML Biobase
"1.13.12" "1.13.3" "1.4-1" "1.13.33"
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