[BioC] ABPkgBuilder error: unable to find an inherited method for function "baseFile<-"

Martin Kircher kirmar at mpi-inf.mpg.de
Tue Jan 16 14:19:45 CET 2007

Thanks for your help. The new version of AnnBuilder is not yet 
available, but I now use a download from the SVN repository...

There are two small errors (at least my version does not accept it) in 
the example given in the help file for ABPkgBuilder - nothing 
significant, but some one may have problems with it...

ABPkgBuilder(baseName = file.path(myDir, "geneNMap"),
     srcUrls = mySrcUrls, baseMapType = "gb",
     otherSrc = otherMapping, pkgName = "myPkg",
     pkgPath = myDir, organism = "Homo sapiens",
     version = "1.1.0", makeXML = TRUE, author =
     c(author = "myname", maintainer =
     "myname at myemail.com"))

The "makeXML = TRUE" is not recognized by my version and it should be 
author = c(authors = "myname", maintainer = "myname at myemail.com")).

Best regards! Martin

 > sessionInfo()
R version 2.5.0 Under development (unstable) (2007-01-11 r40446)


attached base packages:
[1] "tools"     "stats"     "graphics"  "grDevices" "utils"     "datasets"
[7] "methods"   "base"

other attached packages:
AnnBuilder   annotate        XML    Biobase
 "1.13.12"   "1.13.3"    "1.4-1"  "1.13.33"

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