[BioC] Reading hundrets of .cel files and QC thereof

[Wolfgang Raffelsberger]

Dear Bioconductors,

I'm preparing for two projects with 200 arrays each (U133+2).
Currently I use a Fedora (Core 5) Linux Quad AMD Opteron at 16 Go RAM.
Reading a recent post on this list I guess reading the cel files using 
justRMA() or justGCRMA() won't be the probelm.
But does have anyone experience if this is sufficient (or how much I'd 
need) to run QC based on fitPLM(), RLE & NUSE or the affyQCReport package ?
Do you have other suggestions for running QC (besides chopping the 
projects in smaller chunks) ?

 > sessionInfo()
R version 2.4.1 (2006-12-18)
x86_64-unknown-linux-gnu

Thank's in advance,
Wolfgang

 

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Wolfgang Raffelsberger, PhD
Laboratoire de BioInformatique et Génomique Intégrative
IGBMC
1 rue Laurent Fries,  67404 Illkirch  Strasbourg,  France
Tel (+33) 388 65 3300         Fax (+33) 388 65 3276
wolfgang.raffelsberger at igbmc.u-strasbg.fr