September 2007 Archives by thread

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Starting: Sat Sep 1 01:19:06 CEST 2007
Ending: Sat Sep 29 18:08:52 CEST 2007
Messages: 470

• [BioC] Fwd: Re: einem schnellen One- Night- Stand- Ficken ( Grund)   marginal3617 at indiatimes.com
• [BioC] Analysis of many Flagged spots   J.delasHeras at ed.ac.uk
  • [BioC] Analysis of many Flagged spots   Davide Valentini
• [BioC] topTable changes   Gordon Smyth
• [BioC] aCGh data analysis and new journal   William Shannon
• [BioC] buglet (?) snprma (oligo)   Tobias Verbeke
  • [BioC] buglet (?) snprma (oligo)   Benilton Carvalho
• [BioC] ReadAffy Error   Markus Schmidberger
  • [BioC] ReadAffy Error   Sylvia Merk
    • [BioC] ReadAffy Error   Markus Schmidberger
    • [BioC] ReadAffy Error   Markus Schmidberger
• [BioC] Receive your own posts to the list   Pedro López-Romero
  • [BioC] Receive your own posts to the list   STKH (Steen Krogsgaard)
    • [BioC] Receive your own posts to the list   STKH (Steen Krogsgaard)
    • [BioC] Receive your own posts to the list   Pedro López-Romero
• [BioC] Multivariate analysis and Simplicate points   John Lande
• [BioC] question on buildChromLocation   Alessandro Fazio
  • [BioC] question on buildChromLocation   Martin Morgan
• [BioC] A big change for Seth   Seth Falcon
• [BioC] small sample size,microarray, cross-validation   martin.schumacher at novartis.com
  • [BioC] small sample size,microarray, cross-validation   William Shannon
    • [BioC] small sample size,microarray, cross-validation   martin.schumacher at novartis.com
• [BioC] Does anyone have the same problem with new("ExpressionSet", ...) ?   Wolfgang Huber
  • [BioC] Does anyone have the same problem with new("ExpressionSet", ...) ?   Seth Falcon
  • [BioC] Does anyone have the same problem with new("ExpressionSet", ...) ?   Martin Morgan
• [BioC] Bioconductor Digest, Vol 55, Issue 3   Yaping Cheng
• [BioC] p.adjust returns one uniform value   Benjamin Otto
  • [BioC] p.adjust returns one uniform value   Jenny Drnevich
    • [BioC] p.adjust returns one uniform value   Benjamin Otto
• [BioC] how to deal with technical replicates in Limma?   Lana Teixeira Fernandes
• [BioC] RdbiPgSQL: slowness in dbWriteTable   Jeff Gentry
  • [BioC] RdbiPgSQL: slowness in dbWriteTable   Sean Davis
    • [BioC] RdbiPgSQL: slowness in dbWriteTable   Jeff Gentry
      • [BioC] RdbiPgSQL: slowness in dbWriteTable   Sean Davis
• [BioC] problem with GOstats, developmental version?   Jenny Drnevich
  • [BioC] problem with GOstats, developmental version?   Seth Falcon
    • [BioC] problem with GOstats, developmental version?   Mark W Kimpel
      • [BioC] problem with GOstats, developmental version?   Seth Falcon
      • [BioC] problem with GOstats, developmental version?   Jenny Drnevich
      • [BioC] problem with GOstats, developmental version?   Seth Falcon
      • [BioC] problem with GOstats, developmental version?   Jenny Drnevich
      • [BioC] problem with GOstats, developmental version?   James W. MacDonald
• [BioC] hgu95a probe co-ordinates in May 2004 assembly   Janet Young
• [BioC] lty argument not recognised in plot function   Johnstone, Alice
• [BioC] lumi package - lumiHumanV3   Lavinia Gordon
  • [BioC] lumi package - lumiHumanV3   Sean Davis
• [BioC] got different gene expression data from RMA   Meiyin.Gao at unibas.ch
  • [BioC] got different gene expression data from RMA   Benilton Carvalho
  • [BioC] got different gene expression data from RMA   James W. MacDonald
• [BioC] clock genes analysis   Yaping Cheng
  • [BioC] clock genes analysis   Richard Pearson
• [BioC] Limma: Very high logFC values   Ingrid H. G. Østensen
  • [BioC] Limma: Very high logFC values   Joern Toedling
    • [BioC] Limma: Very high logFC values   Ingrid H. G. Østensen
  • [BioC] Limma: Very high logFC values   Ingrid H. G. Østensen
  • [BioC] Limma: Very high logFC values   J.delasHeras at ed.ac.uk
• [BioC] sub PM MM   Simo.rossi
• [BioC] Fwd: RE: p.adjust returns one uniform value   Jenny Drnevich
• [BioC] PM-MM solved   Simo.rossi
• [BioC] LIMMA: paired samples AND technical replicates   Charlotte Schjerling
• [BioC] RdbiPgSQL: slowness in dbWriteTable   John Zhang
  • [BioC] RdbiPgSQL: slowness in dbWriteTable   Sean Davis
• [BioC] issue with color coding heatmaps for positive and negative values   Mark W Kimpel
  • [BioC] issue with color coding heatmaps for positive and negative values   Sean Davis
  • [BioC] issue with color coding heatmaps for positive and negative values   Wolfgang Huber
    • [BioC] different gal files using limma   Tiandao Li
• [BioC] Problem with invalid GO term in HyperGResult object   Jenny Drnevich
  • [BioC] Problem with invalid GO term in HyperGResult object   Jenny Drnevich
    • [BioC] Problem with invalid GO term in HyperGResult object   Seth Falcon
      • [BioC] Problem with invalid GO term in HyperGResult object   Jenny Drnevich
      • [BioC] Problem with invalid GO term in HyperGResult object - NOT solved   Jenny Drnevich
      • [BioC] Problem with invalid GO term in HyperGResult object - NOT solved   Seth Falcon
      • [BioC] Problem with invalid GO term in HyperGResult object - NOT solved   Jenny Drnevich
      • [BioC] Problem with invalid GO term in HyperGResult object - NOT solved   Robert Gentleman
      • [BioC] Problem with invalid GO term in HyperGResult object - NOT solved   James W. MacDonald
      • [BioC] Problem with invalid GO term in HyperGResult object - NOT solved   Jenny Drnevich
      • [BioC] Problem with invalid GO term in HyperGResult object - NOT solved   Herve Pages
      • [BioC] Problem with invalid GO term in HyperGResult object - NOT solved   Jenny Drnevich
      • [BioC] Problem with invalid GO term in HyperGResult object - NOT solved   Robert Gentleman
      • [BioC] Problem with invalid GO term in HyperGResult object - NOT solved   Herve Pages
      • [BioC] Problem with invalid GO term in HyperGResult object - NOT solved   Jenny Drnevich
      • [BioC] Problem with invalid GO term in HyperGResult object - NOT solved   James MacDonald
      • [BioC] Problem with invalid GO term in HyperGResult object - NOT solved   Martin Morgan
      • [BioC] Problem with invalid GO term in HyperGResult object - NOT solved   James MacDonald
      • [BioC] Problem with invalid GO term in HyperGResult object - NOT solved   Jenny Drnevich
      • [BioC] Problem with invalid GO term in HyperGResult object - NOT solved   Herve Pages
      • [BioC] Problem with invalid GO term in HyperGResult object - NOT solved   mcarlson at fhcrc.org
• [BioC] disagreement between biomaRt and topGO   Dick Beyer
  • [BioC] disagreement between biomaRt and topGO   Steffen
    • [BioC] disagreement between biomaRt and topGO   Dick Beyer
  • [BioC] disagreement between biomaRt and topGO   Steffen
    • [BioC] disagreement between biomaRt and topGO   Dick Beyer
• [BioC] promoter regions of DE genes   Glazko, Galina
  • [BioC] promoter regions of DE genes   Steffen
• [BioC] how to install updated CDF package and probe package in R to run GCRMA?   Yan Zhang
• [BioC] Job Posting: Lead Programmer for Pathway Visualization and Analysis Software   Alexander Pico
• [BioC] lty argument not recognised in plot function]   Pan Du
• [BioC] Error in .nextMethod(e1, e2) working with R2.0. in Windows   Lauro Sumoy Van Dyck
  • [BioC] Error in .nextMethod(e1, e2) working with R2.0. in Windows   Martin Morgan
    • [BioC] Error in .nextMethod(e1, e2) working with R2.0. in Windows   Martin Morgan
• [BioC] probe summarization   Bogdan Tanasa
  • [BioC] probe summarization   James W. MacDonald
    • [BioC] probe summarization   Bogdan Tanasa
      • [BioC] probe summarization   James W. MacDonald
• [BioC] Regarding lumiT   Ingrid H. G. Østensen
• [BioC] Get Paid For Answering Surveys - that easy   Lee
• [BioC] Problematic circular design   Daniel Brewer
  • [BioC] Problematic circular design   James W. MacDonald
    • [BioC] Problematic circular design   Naomi Altman
• [BioC] Multiply dye-swaps   Dion Lepp
• [BioC] Multiply dye-swaps   Ana Conesa
• [BioC] RMA on a Data frame or a matrix   Khan, Sohail
  • [BioC] RMA on a Data frame or a matrix   Kasper Daniel Hansen
• [BioC] lty argument not recognised in plot function]   Johnstone, Alice
• [BioC] BioC] LIMMA: paired samples AND technical replicates   Gordon Smyth
  • [BioC] BioC] LIMMA: paired samples AND technical replicates   Charlotte Schjerling
    • [BioC] BioC] LIMMA: paired samples AND technical replicates   Gordon Smyth
      • [BioC] problem running dev version of GCRMA   phguardiol at aol.com
      • [BioC] problem running dev version of GCRMA   Martin Morgan
• [BioC] Getting top level GO category for a list of genes   Palle Villesen (BiRC)
  • [BioC] Getting top level GO category for a list of genes   Paquet, Agnes
• [BioC] PGSEA returning NaN?   Richard Birnie
• [BioC] limma printer layout   Vanessa Vermeirssen
• [BioC] from ORF to UniProt IDs   Alessandro Fazio
• [BioC] snapCGH package for expression data?   lusya at izba.com
• [BioC] T32 Post-Doctoral Training Position in Biostatistics/Toxicogenomics   Kellie J Archer/FS/VCU
• [BioC] Limma: Very high logFC values   Gordon Smyth
  • [BioC] Limma: Very high logFC values   Ingrid H. G. Østensen
• [BioC] gene expression data help   Srinivas Iyyer
  • [BioC] gene expression data help   Sean Davis
• [BioC] limma printer layout   Gordon Smyth
• [BioC] RMA normalisation in Affy   Yogi Sundaravadanam
  • [BioC] RMA normalisation in Affy   Ben Bolstad
• [BioC] problems with command "download.file"   Li Lingdu
  • [BioC] problems with command "download.file"   Jarno Tuimala
• [BioC] PGSEA returning NaN?   Richard Birnie
• [BioC] biomart error   Marco Fabbri
  • [BioC] biomart error   Tony Chiang
    • [BioC] biomart error   Marco Fabbri
• [BioC] Getting associated genes from SNP anntotation files   Holger Schwender
• [BioC] Nadine meinte, die Geilsten deutschen Girls gibt's hier:   Patrizia Habermann
• [BioC] JOB: 5-year research positions in Bioinformatics/Biomathematics. Faculty of Sciences of the University of Porto   Joaquim Fernando Pinto da Costa
• [BioC] arrays with different gal files   Tiandao Li
• [BioC] creating a copy number array data object in DNA copy   jhs1jjm at leeds.ac.uk
  • [BioC] creating a copy number array data object in DNA copy   James W. MacDonald
• [BioC] RMA on a Data frame or a matrix   Michal Blazejczyk
• [BioC] merge MALists   Tiandao Li
• [BioC] How could I interpret a SAM result like this ?   Alex Tsoi
• [BioC] different gal files using limma   Gordon Smyth
  • [BioC] different gal files using limma   Tiandao Li
    • [BioC] different gal files using limma   Gordon Smyth
      • [BioC] different gal files using limma   Tiandao Li
      • [BioC] different gal files using limma   Tiandao Li
      • [BioC] different gal files using limma   Gordon Smyth
• [BioC] Get your ideal weight with this natural method   Bennie Bruno
• [BioC] DNAcopy package, craeting CNA object   jhs1jjm at leeds.ac.uk
  • [BioC] DNAcopy package, craeting CNA object   Sean Davis
• [BioC] analysis of 70 groups for differential expression   Lana Schaffer
• [BioC] Question about how the lmFit function in Limma uses spot weights   Jeremy Darot
• [BioC] slow insertions in to graphNEL object (24 hours for 16k nodes)   Paul Shannon
  • [BioC] slow insertions in to graphNEL object (24 hours for 16k nodes)   Seth Falcon
    • [BioC] biomaRt -> XML::addNode masks graph [was 'slow insertions']   Paul Shannon
      • [BioC] biomaRt -> XML::addNode masks graph   Seth Falcon
    • [BioC] slow insertions in to graphNEL object (24 hours for 16k nodes)   Seth Falcon
      • [BioC] slow graph methods [was: 'slow insertions in to graphNEL object (24 hours for 16k nodes)']   Paul Shannon
      • [BioC] slow graph methods   Martin Morgan
      • [BioC] slow graph methods   Paul Shannon
      • [BioC] slow graph methods   Seth Falcon
      • [BioC] slow graph methods [was: 'slow insertions in to graphNEL object (24 hours for 16k nodes)']   Wolfgang Huber
      • [BioC] slow graph methods [was: 'slow insertions in to graphNEL object (24 hours for 16k nodes)']   Paul Shannon
      • [BioC] slow graph methods [was: 'slow insertions in to graphNEL object (24 hours for 16k nodes)']   Wolfgang Huber
• [BioC] Problem when comparing a large experimental group versus a small control group by using SAM   Alex Tsoi
  • [BioC] Problem when comparing a large experimental group versus a small control group by using SAM   Naomi Altman
• [BioC] filtering on external genelist   D
  • [BioC] filtering on external genelist   James W. MacDonald
    • [BioC] filtering on external genelist   Martin Morgan
• [BioC] error in makecdfenv   Yan Zhang
  • [BioC] error in makecdfenv   James W. MacDonald
• [BioC] timecourse + factorial + replicates in LIMMA   aaron.j.mackey at gsk.com
  • [BioC] timecourse + factorial + replicates in LIMMA   Naomi Altman
    • [BioC] timecourse + factorial + replicates in LIMMA   aaron.j.mackey at gsk.com
      • [BioC] timecourse + factorial + replicates in LIMMA   Naomi Altman
• [BioC] analysis of 70 groups for differential expression   Naomi Altman
  • [BioC] analysis of 70 groups for differential expression   Lana Schaffer
• [BioC] affTableAnn error   Richard Friedman
  • [BioC] affTableAnn error   Seth Falcon
    • [BioC] affTableAnn error   James W. MacDonald
• [BioC] analysis of 70 groups for differential expression   Stephen Henderson
  • [BioC] analysis of 70 groups for differential expression   Artur Veloso
• [BioC] error in matchprobes package   yzhang at vbi.vt.edu
  • [BioC] error in matchprobes package   James W. MacDonald
• [BioC] Between array normalization for biological replicates   Serge Eifes
  • [BioC] Between array normalization for biological replicates   Wolfgang Huber
• [BioC] deleting probes in expression set   Vanessa Vermeirssen
  • [BioC] deleting probes in expression set   Martin Morgan
• [BioC] error in matchprobes package   James W. MacDonald
  • [BioC] error in matchprobes package   Yan Zhang
    • [BioC] error in matchprobes package   James W. MacDonald
      • [BioC] error in matchprobes package   yzhang at vbi.vt.edu
      • [BioC] error in matchprobes package   yzhang at vbi.vt.edu
      • [BioC] error in matchprobes package   James W. MacDonald
      • [BioC] error in matchprobes package   smohapat at vbi.vt.edu
      • [BioC] error in matchprobes package   Yan Zhang
      • [BioC] error in matchprobes package   Zhijin Wu
      • [BioC] error in matchprobes package   Yan Zhang
• [BioC] GOstat with replicates   Naomi Altman
  • [BioC] GOstat with replicates   Seth Falcon
    • [BioC] GOstat with replicates   Robert Gentleman
      • [BioC] GOstat with replicates   Naomi Altman
• [BioC] subset MarrayList   D
  • [BioC] subset MarrayList   Wolfgang Huber
  • [BioC] subset MarrayList   Martin Morgan
• [BioC] trouble with installing Biobase package   Tena Sakai
  • [BioC] trouble with installing Biobase package   Robert Gentleman
    • [BioC] trouble with installing Biobase package   Tena Sakai
• [BioC] beadarray bead-level normalisation for single channel data   Asta Laiho
  • [BioC] beadarray bead-level normalisation for single channel data   J.Oosting at lumc.nl
• [BioC] Rank-product and dye-swap effects   Vinuela, Ana
• [BioC] Having two parallel versions of BioC   arne.mueller at novartis.com
  • [BioC] Having two parallel versions of BioC   Sean Davis
    • [BioC] Having two parallel versions of BioC   Ingrid H. G. Østensen
      • [BioC] KEGG pathway   Yihuan Xu
      • [BioC] KEGG pathway   Marc Carlson
      • [BioC] KEGG pathway   mcarlson at fhcrc.org
  • [BioC] Having two parallel versions of BioC   Oleg Sklyar
• [BioC] create CNA object in DNAcopy package with agilent data   jhs1jjm at leeds.ac.uk
  • [BioC] create CNA object in DNAcopy package with agilent data   Sean Davis
• [BioC] about label permutation test for binary classification   James Anderson
  • [BioC] about label permutation test for binary classification   Joern Toedling
    • [BioC] about label permutation test for binary classification   James Anderson
• [BioC] Help with mix array   Jason Pear
• [BioC] create CNA object in DNAcopy package with agilent data   Sean Davis
• [BioC] problem with function to interrogate x:Map (exonmap)   Wolfgang Raffelsberger
• [BioC] SAM vs. sam2.20   Alex Tsoi
  • [BioC] SAM vs. sam2.20   Holger Schwender
• [BioC] create CNA object in DNAcopy package with agilent data   Sean Davis
• [BioC] create CNA object in DNAcopy package with agilent data   Sean Davis
• [BioC] Error loading Illumina data LumiR   Johnstone, Alice
• [BioC] graph package: how to combine two graphs to create a third?   Paul Shannon
  • [BioC] graph package: how to combine two graphs to create a third?   Li.Long at isb-sib.ch
• [BioC] gcrma problem caused by using updated new CDF and probesequence?   yzhang at vbi.vt.edu
• [BioC] help for canine 2.0 arrays   Wei Wang
  • [BioC] help for canine 2.0 arrays   James W. MacDonald
• [BioC] plot with CI   carol white
• [BioC] packages recommendation   Tiandao Li
• [BioC] R/BioC workshops in Southern California   Thomas Girke
• [BioC] GCRMA works for my updated cdf and probesequence files.   yzhang at vbi.vt.edu
  • [BioC] GCRMA works for my updated cdf and probesequence files.   smohapat at vbi.vt.edu
• [BioC] Problem with "as.matrix.vsn" and "duplicateCorrelation" from limma   Artur Veloso
  • [BioC] Problem with "as.matrix.vsn" and "duplicateCorrelation" from limma   Wolfgang Huber
• [BioC] Question on limma single-channel analysis of dual-channel microarray   Deanne Taylor
  • [BioC] Question on limma single-channel analysis of dual-channel microarray   Naomi Altman
    • [BioC] Question on limma single-channel analysis of dual-channel microarray   Deanne Taylor
• [BioC] Problem with "as.matrix.vsn" and "duplicateCorrelation" fromlimma   Gordon Smyth
  • [BioC] "as.matrix.vsn"   Wolfgang Huber
    • [BioC] "as.matrix.vsn"   Artur Veloso
• [BioC] Problem with getSnpAnnotation (2)   Olivier Nuñez
  • [BioC] Problem with getSnpAnnotation (2)   Rob Scharpf
    • [BioC] Problem with getSnpAnnotation (2)   Olivier Nuñez
  • [BioC] Problem with getSnpAnnotation (2)   Rob Scharpf
    • [BioC] warning in plotSnp   Olivier Nuñez
      • [BioC] warning in plotSnp   Rob Scharpf
• [BioC] Extremely low p-values in limma   Muller, Pie
  • [BioC] Extremely low p-values in limma   Naomi Altman
    • [BioC] Extremely low p-values in limma   Muller, Pie
      • [BioC] Extremely low p-values in limma   Naomi Altman
      • [BioC] Extremely low p-values in limma   Muller, Pie
      • [BioC] Extremely low p-values in limma   Naomi Altman
• [BioC] assign a same probe to differents probesets   Maud.ARSAC at eu.biomerieux.com
  • [BioC] assign a same probe to differents probesets   Ben Bolstad
  • [BioC] assign a same probe to differents probesets   lgautier at altern.org
    • [BioC] assign a same probe to differents probesets   Kasper Daniel Hansen
• [BioC] segmentation for Affy SNP arrays   Yu Chuan Tai
  • [BioC] segmentation for Affy SNP arrays   Kasper Daniel Hansen
    • [BioC] segmentation for Affy SNP arrays   Yu Chuan Tai
      • [BioC] segmentation for Affy SNP arrays   Ramon Diaz-Uriarte
      • [BioC] segmentation for Affy SNP arrays   Benjamin Otto
      • [BioC] segmentation for Affy SNP arrays   Yu Chuan Tai
      • [BioC] segmentation for Affy SNP arrays   Sylvia.Merk at ukmuenster.de
• [BioC] limma questions (normalization)   Brooke LaFlamme
• [BioC] topTable in limma   Brooke LaFlamme
• [BioC] probe masking   Donna Toleno
  • [BioC] probe masking   James MacDonald
    • [BioC] probe masking   Donna
      • [BioC] probe masking   James MacDonald
• [BioC] Microarray Workshop in Tucson, January 2008   David Henderson
• [BioC] RMA of CEL files from different chip types   Abhishek Tripathi
  • [BioC] RMA of CEL files from different chip types   James W. MacDonald
  • [BioC] RMA of CEL files from different chip types   David Ruau
• [BioC] analysis of 70 groups for differential expression   Stephen Henderson
• [BioC] which package to cluster microarray data?   Alessandro Fazio
  • [BioC] which package to cluster microarray data?   David Ruau
  • [BioC] which package to cluster microarray data?   Wolfgang Raffelsberger
• [BioC] Unexpected lumiR error message   jarod07 at ucla.edu
  • [BioC] Unexpected lumiR error message   Cei Abreu-Goodger
• [BioC] Stuck with Yeast Tiling Array   Richard Harrison
  • [BioC] Stuck with Yeast Tiling Array   Joern Toedling
    • [BioC] Stuck with Yeast Tiling Array   Richard Harrison
      • [BioC] Stuck with Yeast Tiling Array   Joern Toedling
      • [BioC] Stuck with Yeast Tiling Array   Richard Harrison
      • [BioC] Stuck with Yeast Tiling Array   Joern Toedling
• [BioC] homologs for xenopus laevis   Mayte Suarez-Farinas
• [BioC] Limma/Time Course Experiments   Lana Schaffer
  • [BioC] Limma/Time Course Experiments   Mark Robinson
• [BioC] chromosome arms missing from Affy's Mapping 500K Array Set SNP chips?   Wittner, Ben, Ph.D.
  • [BioC] chromosome arms missing from Affy's Mapping 500K Array Set SNP chips?   Stephanie Mewborn
• [BioC] analysis of 70 groups for differential expression   Gordon Smyth
• [BioC] limma questions (normalization)   Gordon Smyth
• [BioC] topTable in limma   Gordon Smyth
• [BioC] Error loading Illumina data LumiR   Johnstone, Alice
• [BioC] Integrating confidence in HMM   Olivier Nuñez
  • [BioC] Integrating confidence in HMM   Rob Scharpf
• [BioC] segmentation for Affy SNP arrays   Rob Scharpf
• [BioC] ReadAffy widget fails for Annotated DataFrame   Kevin R. Coombes
  • [BioC] ReadAffy widget fails for Annotated DataFrame   Martin Morgan
    • [BioC] ReadAffy widget fails for Annotated DataFrame   Kevin R. Coombes
• [BioC] Beadarray negative background values (bug?)   Arno Velds
  • [BioC] Beadarray negative background values (bug?)   Richard Pearson
    • [BioC] Beadarray negative background values (bug?)   Matt Ritchie
• [BioC] LIMMA: MA, design, and contrasts   Tiandao Li
  • [BioC] LIMMA: MA, design, and contrasts   Jenny Drnevich
    • [BioC] LIMMA: MA, design, and contrasts   Tiandao Li
      • [BioC] LIMMA: MA, design, and contrasts   Jenny Drnevich
• [BioC] help for BH - FDR and Fold Change filtering question,   Saurin D. Jani
  • [BioC] help for BH - FDR and Fold Change filtering question,   James MacDonald
    • [BioC] help for BH - FDR and Fold Change filtering question,   Saurin D. Jani
• [BioC] Keeping all BioC and CRAN installed packages up to date the easy way   Mark W Kimpel
• [BioC] Cel image   Yogi Sundaravadanam
  • [BioC] Cel image   smohapat at vbi.vt.edu
    • [BioC] Cel image   Yogi Sundaravadanam
      • [BioC] Cel image   Henrik Bengtsson
      • [BioC] Cel image   darteta001 at ikasle.ehu.es
      • [BioC] Cel image   David Ruau
• [BioC] Fwd: limma questions (normalization) - correction   Gordon Smyth
• [BioC] problem with osx darwin 8.10.0   Andrea Tanzer
  • [BioC] problem with osx darwin 8.10.0   Kasper Daniel Hansen
  • [BioC] problem with osx darwin 8.10.0   Diego Diez
    • [BioC] problem with osx darwin 8.10.0   Robert Gentleman
• [BioC] affylmGUI: options for 'Export HTML Report'?   Keith Satterley
• [BioC] GSB adjustment in GCRMA   Pierre Neuvial
  • [BioC] GSB adjustment in GCRMA   Zhijin Wu
• [BioC] Building Rgraphviz w/ Graphviz 2.14   Emil Lundberg
  • [BioC] Building Rgraphviz w/ Graphviz 2.14   Li.Long at isb-sib.ch
  • [BioC] Building Rgraphviz w/ Graphviz 2.14   Robert Gentleman
• [BioC] Fwd: limma questions (normalization) - correction   Brooke LaFlamme
• [BioC] Building Rgraphviz w/ Graphviz 2.14   Li.Long at isb-sib.ch
  • [BioC] Building Rgraphviz w/ Graphviz 2.14   Emil Lundberg
• [BioC] Cannot allocate vector of size xxxxxxkb   Brooks, Anthony B
  • [BioC] Cannot allocate vector of size xxxxxxkb   Dermot Morris
  • [BioC] Cannot allocate vector of size xxxxxxkb   Park-Ng, Zaneta
• [BioC] Réf. : Re: assign a same probe to differents probesets   Maud.ARSAC at eu.biomerieux.com
• [BioC] affyPLM and exon array question   Henrik Bengtsson
  • [BioC] affyPLM and exon array question   Ben Bolstad
• [BioC] PhD at EMBL   Wolfgang Huber
• [BioC] Analysis of two sample gene files in lumi   Yogi Sundaravadanam
  • [BioC] Analysis of two sample gene files in lumi   Cei Abreu-Goodger
• [BioC] I would like to join the mailing list   Daniel Rico
  • [BioC] I would like to join the mailing list   Richard Pearson
• [BioC] Newbie Problems with Agilent data   elliot harrison
• [BioC] Knn and midding value   claudio.is at libero.it
• [BioC] Knn and missing value   claudio.is at libero.it
  • [BioC] Knn and missing value   Federico Abascal
  • [BioC] Knn and missing value   Matthias E. Futschik
• [BioC] maSigPro: Warning   Ingrid H. G. Østensen
  • [BioC] maSigPro: Warning   Ana Conesa
• [BioC] Air Turkey.   Air Turkey
• [BioC] Arabidopsis thaliana cdf ath1121501   Naira Naouar
  • [BioC] Arabidopsis thaliana cdf ath1121501   James W. MacDonald
    • [BioC] Arabidopsis thaliana cdf ath1121501   Naira Naouar
      • [BioC] Arabidopsis thaliana cdf ath1121501   mcarlson at fhcrc.org
• [BioC] job ad: postdoctoral scientist in computational biology   Crispin Miller
• [BioC] annotation on mouse4302   Mayte Suarez-Farinas
  • [BioC] annotation on mouse4302   Steffen
    • [BioC] annotation on mouse4302   Marc Carlson
• [BioC] Analysis of two sample gene files in lumi   Pan Du
• [BioC] Problem with R-2.5.1 on SuSE 10.1   Weigong Ge
  • [BioC] Problem with R-2.5.1 on SuSE 10.1   Kasper Daniel Hansen
• [BioC] symbol annotation using probes2tableBM   Mayte Suarez-Farinas
  • [BioC] symbol annotation using probes2tableBM   James W. MacDonald
• [BioC] code for technical replicates in Limma with affy   Richard Friedman
• [BioC] problem with probes2tableBM   Mayte Suarez-Farinas
  • [BioC] problem with probes2tableBM   Steffen
    • [BioC] problem with probes2tableBM   James W. MacDonald
• [BioC] Agilent CGH data   jhs1jjm at leeds.ac.uk
  • [BioC] Agilent CGH data   Sean Davis
    • [BioC] Agilent CGH data   Sean Davis
      • [BioC] Agilent CGH data   jhs1jjm at leeds.ac.uk
      • [BioC] Agilent CGH data   jhs1jjm at leeds.ac.uk
• [BioC] Nadine meinte, die Geilsten deutschen Girls gibt's hier:   "Günter Walther"
• [BioC] how to 'bootstrap' expression data?   Johnstone, Alice
  • [BioC] how to 'bootstrap' expression data?   James MacDonald
  • [BioC] how to 'bootstrap' expression data?   Kasper Daniel Hansen
• [BioC] QC in lumi   Yogi Sundaravadanam
• [BioC] FW: how to 'bootstrap' expression data?   Johnstone, Alice
• [BioC] Ratherthan lack it where there.   Royal Bruno
• [BioC] gDNA Cy3, cDNA Cy5   Al Ivens
  • [BioC] gDNA Cy3, cDNA Cy5   Wolfgang Huber
    • [BioC] gDNA Cy3, cDNA Cy5   Al Ivens
• [BioC] batch effects and VSN   Hans-Ulrich Klein
  • [BioC] batch effects and VSN   Wolfgang Huber
• [BioC] Live linux CD with bioconductor on   Daniel Brewer
  • [BioC] Live linux CD with bioconductor on   Herve Pages
    • [BioC] Live linux CD with bioconductor on   Oleg Sklyar
• [BioC] processCGH in snapCGH package   jhs1jjm at leeds.ac.uk
  • [BioC] processCGH in snapCGH package   J-C. Marioni
    • [BioC] processCGH in snapCGH package   jhs1jjm at leeds.ac.uk
  • [BioC] processCGH in snapCGH package   Sean Davis
    • [BioC] processCGH in snapCGH package   jhs1jjm at leeds.ac.uk
      • [BioC] processCGH in snapCGH package   jhs1jjm at leeds.ac.uk
      • [BioC] processCGH in snapCGH package   Sean Davis
      • [BioC] processCGH in snapCGH package   jhs1jjm at leeds.ac.uk
• [BioC] spottype file for 2-color array   yoo hoo
  • [BioC] spottype file for 2-color array   Keith Satterley
• [BioC] Integrating confidence in HMM (2)   Rob Scharpf
• [BioC] annotate and biomaRt: inconsistent behaviour; nsFilter question   Saira Mian
  • [BioC] annotate and biomaRt: inconsistent behaviour; nsFilter question   James W. MacDonald
    • [BioC] annotate and biomaRt: inconsistent behaviour; nsFilter question   Steffen
• [BioC] Problem with GOPkgBuilder from AnnBuilder when trying to create an updated GO data package   Stefan Goetz
  • [BioC] Problem with GOPkgBuilder from AnnBuilder when trying to create an updated GO data package   mcarlson at fhcrc.org
    • [BioC] Problem with GOPkgBuilder from AnnBuilder when trying to create an updated GO data package   Stefan Goetz
      • [BioC] Problem with GOPkgBuilder from AnnBuilder when trying to create an updated GO data package   mcarlson at fhcrc.org
      • [BioC] Problem with GOPkgBuilder from AnnBuilder when trying to create an updated GO data package   Stefan Goetz
      • [BioC] Problem with GOPkgBuilder from AnnBuilder when trying to create an updated GO data package   Robert Gentleman
      • [BioC] Problem with GOPkgBuilder from AnnBuilder when trying to create an updated GO data package   Stefan Goetz
      • [BioC] Problem with GOPkgBuilder from AnnBuilder when trying to create an updated GO data package   Wolfgang Huber
• [BioC] Biological replicates   Yogi Sundaravadanam
  • [BioC] Biological replicates   Jenny Drnevich
    • [BioC] Biological replicates   Yogi Sundaravadanam
• [BioC] Read depth analysis   João Fadista
• [BioC] beadarray: combining several beadsummary data objects   Asta Laiho
  • [BioC] beadarray: combining several beadsummary data objects   Matt Ritchie
• [BioC] Retrieve SNP sequence from dbSNP using BioMart   Johanna Hasmats
• [BioC] Retrieve SNP sequence from dbSNP using BioMart   Steffen Durinck
• [BioC] lumi Package lumiR error   wayne xu
  • [BioC] lumi Package lumiR error   Ingrid H. G. Østensen
    • [BioC] lumi Package lumiR error   wayne xu
• [BioC] Biological replicates   Yogi Sundaravadanam
• [BioC] Biological replicates   Ana Conesa
  • [BioC] Biological replicates   Naomi Altman
• [BioC] maSigPro   Ingrid H. G. Østensen
  • [BioC] maSigPro   Ana Conesa
• [BioC] vsn and scaling   Dr Roslin Russell
  • [BioC] vsn and scaling   Wolfgang Huber
• [BioC] vsm2   Richard Harrison
  • [BioC] vsm2   Richard Harrison
  • [BioC] vsm2   Wolfgang Huber
• [BioC] processCGH with snapCGH   jhs1jjm at leeds.ac.uk
  • [BioC] processCGH with snapCGH   jhs1jjm at leeds.ac.uk
    • [BioC] processCGH with snapCGH   Sean Davis
      • [BioC] processCGH with snapCGH   jhs1jjm at leeds.ac.uk
      • [BioC] processCGH with snapCGH   Sean Davis
• [BioC] simple biomaRt query   Glazko, Galina
  • [BioC] simple biomaRt query   James W. MacDonald
  • [BioC] simple biomaRt query   Steffen
• [BioC] simple biomaRt query, found an error: old version   Glazko, Galina
  • [BioC] simple biomaRt query, found an error: old version   Steffen
• [BioC] DNAString ("GC") -- error in nchar?   Paul Shannon
  • [BioC] DNAString ("GC") -- error in nchar?   Henrik Bengtsson
  • [BioC] DNAString ("GC") -- error in nchar?   Herve Pages
    • [BioC] DNAString ("GC") -- error in nchar?   Paul Shannon
      • [BioC] DNAString ("GC") -- error in nchar?   Herve Pages
      • [BioC] DNAString ("GC") -- error in nchar?   Paul Shannon
      • [BioC] DNAString ("GC") -- error in nchar?   Herve Pages
      • [BioC] DNAString ("GC") -- error in nchar?   Martin Morgan
      • [BioC] DNAString ("GC") -- error in nchar?   Paul Shannon
      • [BioC] DNAString ("GC") -- error in nchar?   Martin Morgan
      • [BioC] DNAString ("GC") -- error in nchar?   Henrik Bengtsson
      • [BioC] DNAString ("GC") -- error in nchar?   Herve Pages
      • [BioC] DNAString ("GC") -- error in nchar?   Henrik Bengtsson
• [BioC] findest Du die Frauen, die genau das gleiche suchen wie Du! ( mu�ten)   protest2718 at indiatimes.com

Last message date: Sat Sep 29 18:08:52 CEST 2007
Archived on: Sat Sep 29 18:09:11 CEST 2007

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