[BioC] Analysis of two sample gene files in lumi

[Pan Du]

Hi Yogi,

You can input the data files separately and then using combine() function to
combine the data. Also I just added a new function: lumiR.batch, which can
input multiple data files together. You can have a try.


Pan


On 9/24/07 5:00 AM, "bioconductor-request at stat.math.ethz.ch"
<bioconductor-request at stat.math.ethz.ch> wrote:

> Message: 2
> Date: Mon, 24 Sep 2007 16:14:49 +1000
> From: "Yogi Sundaravadanam" <yogi.sundaravadanam at agrf.org.au>
> Subject: [BioC] Analysis of two sample gene files in lumi
> To: bioconductor <bioconductor at stat.math.ethz.ch>
> Message-ID: <H000029400321fec.1190614488.mailmaster.agrf.org.au at MHS>
> Content-Type: text/plain
> 
> Hi all
> 
>  
> 
> I have got 2 sample gene profile files (18 illumina samples in each) and
> I would like to analyse them together in lumi. Is this possible? I just
> thought I‚d copy-paste contents of one file into another, but there
> aren‚t sufficient columns in Excel to accommodate this concatenation.
> 
>  
> 
> I was thinking may be I should edit the files to isolate columns that
> are really necessary but I was just wondering if there is a simple way
> to do this, as my knowledge of R is pretty challenged.
> 
>  
> 
>  
> 
> Cheers
> 
> Yogi