[BioC] GCRMA works for my updated cdf and probesequence files.

[smohapat at vbi.vt.edu]

Yan:

I am glad that your problem is solved.

Best,

Saroj

On Sat, September 15, 2007 2:31 pm, yzhang at vbi.vt.edu wrote:
> zhijin, Jim and Saroj:
>
> After trimmed those extra probe from probesequece file, I finally make
> gcrma start to work. Thank you very much for your great help.
>
>
> When I got those updated cdf and probesequence file, I checked and
> confirmed that all of probeset ID show in cdf file also show in
> probesequence file. But I did not check reversely. Saroj help me identify
>  that there are extra probeset ID in probesequence file. After trimmed
> out those extra probeset id, I still could not make gcrma work. Dr. Wu
> help me identify there are some extra probe in probesequence file. (some
> probeset have different number of probes between cdf and probesequence
> file). After trimmed those extra probes, gcrma start to work.
> I think makeProbepackage function should do this match check.
> Jim:
> Thanks a lot for your great help. You make me have confident. From your
> e-mail, you make me believe that with people's help, I could solve this
> problem.
>
> best wish yan
>
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