[BioC] KEGG pathway

Yihuan Xu Yihuan.xu at jefferson.edu
Thu Sep 13 16:53:53 CEST 2007


Dear all,

I am interested in a gene pla2g2a, which KEGG entry is 18780. DBGET resurlt 
for mmu18780 in KEGG website shows there are 9 pathways containning this 
gene. I checked one of these pathways (mmu00590) using KEGG package, however 
18780 didn't show up in the pathway.

my code:
> library(KEGG)
> aa <-as.list(KEGGPATHID2EXTID)
> aa$mmu00590
 [1] "106648" "107141" "109857" "11684"  "11685"  "11686"  "11687"  "11688"
 [9] "12408"  "12409"  "13088"  "13089"  "13090"  "13094"  "13095"  "13096"
[17] "13097"  "13098"  "13099"  "13106"  "13109"  "13110"  "13117"  "13118"
[25] "13119"  "13850"  "14598"  "14775"  "14776"  "14778"  "14780"  "16993"
[33] "17001"  "170716" "18778"  "18781"  "18782"  "18783"  "18784"  "19215"
[41] "19223"  "19224"  "19225"  "207182" "21391"  "226105" "226143" "23887"
[49] "26565"  "26970"  "26971"  "28200"  "329502" "404195" "53357"  "54486"
[57] "64292"  "64385"  "66350"  "67305"  "69836"  "69888"  "70101"  "71519"
[65] "72054"  "72082"  "72303"  "74519"  "75512"  "96979"

KEGG DBGET resurlt:
http://www.genome.jp/dbget-bin/www_bget?mmu:18780


Do you know what happened here? Thank you very much.

Yihuan

************************************************
Yihuan Xu
Biostatistician
Division of Biostatistics
Department of Pharmacology and Experimental Therapeutics
Thomas Jefferson University
1015 Chestnut Street, Suite M100
Philadelphia, PA19107
Phone: 215-503-1357
Fax: 215-503-3804



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