[BioC] Error loading Illumina data LumiR

[Johnstone, Alice]

 An update of R has fixed this, a post made the same day re biobase
indicated an upgrade of R was required.  My apologies for missing this.
Cheers
Alice

-----Original Message-----
From: Johnstone, Alice 
Sent: Friday, 14 September 2007 9:24 a.m.
To: bioconductor at stat.math.ethz.ch
Subject: Error loading Illumina data LumiR

Hi
Recently updated the packages and tried to rerun my lumi code but now I
get the following error when reading in my data.
Thanks


> data.lumi<-lumiR(fileName,na.rm=TRUE,lib="lumiRatV1")
Error in .as.numeric_version(e1) : 
  could not find function "numeric_version"
In addition: Warning messages:
1: closing unused connection 4
(ROD-AJ-BeadStudioV2_Sample_Probe_Profile_edited.csv)
2: closing unused connection 3
(ROD-AJ-BeadStudioV2_Sample_Probe_Profile_edited.csv)
Error in isVersioned(object) : 
  error in evaluating the argument 'object' in selecting a method for
function 'isVersioned' 
 



> sessionInfo()
R version 2.6.0 Under development (unstable) (2007-08-11 r42469)
i386-pc-mingw32 

locale:
LC_COLLATE=English_New Zealand.1252;LC_CTYPE=English_New
Zealand.1252;LC_MONETARY=English_New
Zealand.1252;LC_NUMERIC=C;LC_TIME=English_New Zealand.1252

attached base packages:
[1] tools     stats     graphics  grDevices utils     datasets  methods
base     

other attached packages:
 [1] limma_2.11.12          lumiRatV1_1.3.0        lumi_1.3.30
annotate_1.15.7        AnnotationDbi_0.0.88  
 [6] RSQLite_0.6-0          DBI_0.2-3              mgcv_1.3-25
affy_1.15.7            preprocessCore_0.99.12
[11] affyio_1.5.8           Biobase_1.15.33       
> 



P Think before you print
This e-mail transmission and any attachments that accompany it may contain information that is privileged, confidential or otherwise exempt from disclosure under applicable law and is intended solely for the use of the individual(s) to whom it was intended to be addressed.
If you have received this e-mail by mistake, or you are not the intended recipient, any disclosure, dissemination, distribution, copying or other use or retention of this communication or its substance is prohibited. If you have received this communication in error, please immediately reply to the author via e-mail that you received this message by mistake and also permanently delete the original and all copies of this e-mail and any attachments from your computer. Thank you.