[BioC] lumi Package lumiR error

wayne xu wxu at msi.umn.edu
Thu Sep 27 19:16:29 CEST 2007


Hello,

I got following error " attempt to set rownames on object with no 
dimensions" when I use lumiR to read data file that was exported from 
BeadStudio software. Your help would be greatly appreciated,

Wayne
--


 > library(lumi)
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: affy
Loading required package: affyio
Loading required package: mgcv
This is mgcv 1.3-23
Loading required package: annotate
 > file<-'probeprofile.txt'
 > data <- lumiR(file)
Error in `rownames<-`(`*tmp*`, value = c("6960451", "2850504", "7560397",  :
        attempt to set rownames on object with no dimensions


the beginning portion of the input data file 'probeprofile.txt'

TargetID 	ProbeID 	1825389103_A.AVG_Signal 	1825389103_A.BEAD_STDEV 
1825389103_A.Detection Pval
ILMN_10000 	6960451 	250.1372 	8.470804 	0.002183
ILMN_100000 	2850504 	114.0987 	5.470057 	0.334061
ILMN_100007 	7560397 	113.8673 	4.840002 	0.34425



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