[BioC] lumi Package lumiR error
wayne xu
wxu at msi.umn.edu
Thu Sep 27 19:16:29 CEST 2007
Hello,
I got following error " attempt to set rownames on object with no
dimensions" when I use lumiR to read data file that was exported from
BeadStudio software. Your help would be greatly appreciated,
Wayne
--
> library(lumi)
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: affy
Loading required package: affyio
Loading required package: mgcv
This is mgcv 1.3-23
Loading required package: annotate
> file<-'probeprofile.txt'
> data <- lumiR(file)
Error in `rownames<-`(`*tmp*`, value = c("6960451", "2850504", "7560397", :
attempt to set rownames on object with no dimensions
the beginning portion of the input data file 'probeprofile.txt'
TargetID ProbeID 1825389103_A.AVG_Signal 1825389103_A.BEAD_STDEV
1825389103_A.Detection Pval
ILMN_10000 6960451 250.1372 8.470804 0.002183
ILMN_100000 2850504 114.0987 5.470057 0.334061
ILMN_100007 7560397 113.8673 4.840002 0.34425
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