[BioC] problem running dev version of GCRMA

[Martin Morgan]

Philippe -- Biobase is using 'numeric_version', which is available
only in a version of R later than the one you are using. Update R.

Martin

phguardiol at aol.com writes:

> Dear BioC users,
>
> I have recently downloaded the dev version of affy and gcrma libraries (cf infra), as well as the dev metadata I need (cf infra) and when I launch a justGCRMA operation it gives me the error message below that I dont know how to interpret/use/correct.
>
> Any help will be greatly appreciated.
>
> Philippe G
>
> I m using R 2.6 under dev 2007-07-09 r42161
> on a windows XPpro PC
> and the following packages: affy 1.15.9, affyio 1.5.11, biobase1.15.36, gcrma2.9.1, matchprobes1.9.10, preprocessore 0.99.21, hgu133plus2probe1.17.0, hgu133plus2cdf 1.17.0, hgu133plus2.db. 1.99.3?
>
>> library(affy)
> Loading required package: Biobase
> Loading required package: tools
>
> Welcome to Bioconductor
>
> ? Vignettes contain introductory material. To view, type
> ? 'openVignette()'. To cite Bioconductor, see
> ? 'citation("Biobase")' and for packages 'citation(pkgname)'.
>
> Loading required package: affyio
> Loading required package: preprocessCore
>> library(gcrma)
> Loading required package: matchprobes
> Loading required package: splines
>> data1<-justGCRMA()
> Computing affinitiesError in .as.numeric_version(e1) : 
> ? could not find function "numeric_version"
> Error in pmindex(new("AffyBatch", cdfName = cdfname)) : 
> ? error in evaluating the argument 'object' in selecting a method for function 'pmindex'
>
> 	[[alternative HTML version deleted]]
>
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-- 
Martin Morgan
Bioconductor / Computational Biology
http://bioconductor.org