[BioC] ReadAffy widget fails for Annotated DataFrame
Kevin R. Coombes
krc at mdacc.tmc.edu
Thu Sep 20 15:43:48 CEST 2007
Hi,
Why does ReadAffy fail for the AnnotatedDateFrame part of an AffyBatch
object? The session snapshot included below shows an error in using
tkWidgets for AnnotatedDataFrames.
I just upgraded to R 2.5.1 (so I would have the same version as the
students in the microarray class I'm teaching), and code that worked in
2.4 fails to work in 2.5.
Thanks for your help,
Kevin
> ReadAffy(widget=TRUE)
Loading required package: tkWidgets
Loading required package: widgetTools
Loading required package: tcltk
Loading Tcl/Tk interface ... done
Loading required package: DynDoc
Error in read.AnnotatedDataFrame(sampleNames = sampleNames, widget =
TRUE) :
sorry, tkWidgets support not available for read.AnnotatedDataFrame
> sessionInfo()
R version 2.5.1 (2007-06-27)
i386-pc-mingw32
locale:
LC_COLLATE=English_United States.1252;LC_CTYPE=English_United
States.1252;LC_MONETARY=English_United
States.1252;LC_NUMERIC=C;LC_TIME=English_United States.1252
attached base packages:
[1] "tcltk" "tools" "stats" "graphics" "grDevices" "utils"
[7] "datasets" "methods" "base"
other attached packages:
tkWidgets DynDoc widgetTools affy affyio Biobase
"1.14.0" "1.14.0" "1.12.0" "1.14.2" "1.4.1" "1.14.1"
>
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