[BioC] subset MarrayList
D
spam56 at gto.net
Wed Sep 12 23:35:07 CEST 2007
Hi there,
I'm trying to subset an Marraylist in limma to remove low intensity values
before fitting the linear model. Forgive me if I'm missing something obvious,
I'm a novice at R. Here's what I'm doing:
A.filter<-MA$A<10
MA.filterd<-MA[A.filter,]
But I get:
Error in '[.MAList'(MA,A.filter, ) : (subscript) logical subscript too long
It seems to be similar to what's shown in the user guide under the Weaver data:
isGene <- MA$genes$Status == "Riken"
fit <- lmFit(MA[isGene, ], design)
Any help is appreciated
D
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