[BioC] spottype file for 2-color array

[Keith Satterley]

Hi Michael,

Try section 4.8 "The Spot Types File" in the limma userguide.pdf in the 
library/limma/doc subdirectory of your R installation.

Here is an example I have used:

SpotType	ID	Name	Color
Gene	*	*	black
QC	*	QC*	orange
Control	*	Cntrl*	brown
Empty	*	empty	purple
NegCtrl	*	NC*	pink

which shows my Controls, whose ID begins with Cntrl, as brown etc.

cheers,

Keith

========================
Keith Satterley
Bioinformatics Division
The Walter and Eliza Hall Institute of Medical Research
Parkville, Melbourne,
Victoria, Australia
=======================

yoo hoo wrote:
> Hi All,
> 
> when i deal with 2-color arrays, usually it requires to generate a spottype file. Where can i find those info to generate this file? i use Nimblegen and agilent arrays. Thanks.
> 
> Michael
> 
> 	[[alternative HTML version deleted]]
> 
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