[BioC] GOstat with replicates

[Naomi Altman]

There are times when it makes sense to have genes duplicated in both 
the universe and the set of interest - e.g. if the geneIds come from 
BLAST hits of unigenes of an unsequenced species against the genes of 
a sequenced species.

I fiddled a bit with GOstat, but was not able to see how to change 
the code to allow this.  (I can see where duplication was removed in 
the gene set but not in the universe.)
If someone could tell me where to look in the code, I would be happy 
to contribute back the modified code allowing duplication.

Naomi S. Altman                                814-865-3791 (voice)
Associate Professor
Dept. of Statistics                              814-863-7114 (fax)
Penn State University                         814-865-1348 (Statistics)
University Park, PA 16802-2111