March 2007 Archives by thread
Starting: Thu Mar 1 09:13:37 CET 2007
Ending: Sat Mar 31 14:50:02 CEST 2007
Messages: 349
- [BioC] 2 Courses: (1) R/Splus Advanced Programming - San Francisco- (2) Data Mining: Practical Tools and Techniques in R/Splus- Salt Lake City
STKH (Steen Krogsgaard)
- [BioC] time series analysis
David Ruau
- [BioC] a question about normalize among different chip arrays
mi ding
- [BioC] some questions about "humanCHRLOC"
li lilingdu
- [BioC] Exclude probes that show sd above 0.1 between replicatevalues
J.Oosting at lumc.nl
- [BioC] Best way to import GCOS tab-delimited life
Daniel Brewer
- [BioC] Question about turning strings into variable names in R
J.delasHeras at ed.ac.uk
- [BioC] genefilter and libpthread
Ramon Diaz-Uriarte
- [BioC] [R] object is not subsettable
Seth Falcon
- [BioC] Machine learning
Weiyin Zhou
- [BioC] I would like to know how to run PRvQCHyb in arrayQuality
Wonjong Moon
- [BioC] Illumina - Beadarray - Limma
Simon Lin
- [BioC] position available immediately
Wall, Dennis Paul
- [BioC] best package for cDNA single channel microarrays
Artur Veloso
- [BioC] GSEA with one class metaanalysis
Mark W Kimpel
- [BioC] GSEA for meta-analysis
Mark W Kimpel
- [BioC] problems with lumi
Anand C. Patel
- [BioC] gcrma and chip without mm values
Hongmei Jia
- [BioC] GSEA with one class metaanalysis
Gordon Smyth
- [BioC] time series analysis
Gordon Smyth
- [BioC] geneSetTest() / GESA
Simon Lin
- [BioC] resample of DNA/protein sequences and compute pairwise distances
Nora Muda
- [BioC] scaling normalization between groups
Karin Lagesen
- [BioC] Updating annotation packages
Ingrid H. G. Østensen
- [BioC] ABPkgBuilder trouble
Johan Lindberg
- [BioC] HT_HG-U133A_EA
Shiju Zhang
- [BioC] rma on new samples
Malick.PAYE at eu.biomerieux.com
- [BioC] geneSetTest() / GESA
Gordon Smyth
- [BioC] silly question about tune.svm in e1071
James Anderson
- [BioC] two questions about limma
zhaodj at ioz.ac.cn
- [BioC] resample of DNA/protein sequences and compute pairwise distances
Nora Muda
- [BioC] Unable to compile the impute package on debian with gcc 4.1
Sebastian Bauer
- [BioC] acgh process problem
Daniel Brewer
- [BioC] Pathways missing
Mayte Suarez-Farinas
- [BioC] HT_HG-U133A_EA
Hassane, Duane
- [BioC] Normalization in davidTiling demo
Julian Gehring
- [BioC] MBEI on 60 U133 Plus 2.0 arrays
knaxerov at ix.urz.uni-heidelberg.de
- [BioC] globaltest and coxph
Mayte Suarez-Farinas
- [BioC] two questions about limma
Gordon Smyth
- [BioC] crlmm warning
Morten Mattingsdal
- [BioC] Unable to compile the impute package on debian with gcc 4.1
Seth Falcon
- [BioC] NEwbie: How to determine significant enrichment differences of GO term vectors?
Johannes Graumann
- [BioC] Options for spatial normalization?
Oliver Homann
- [BioC] RMA, RefRMA questions
James Anderson
- [BioC] two questions about limma (cont.2)
De-Jian,ZHAO
- [BioC] GOStats: HyperGTest question
Johannes Graumann
- [BioC] Re-announcement: Statistical Analysis of Metabonomic and Proteomic Data - MOLPAGE Training WorkPackage Series
Brian Tom
- [BioC] Options for spatial normalization? (Oliver Homann)
Tarca, Adi
- [BioC] verification
Vasiliki Xiarchou
- [BioC] OSX location of bioconductor functions
Bobby Prill
- [BioC] arrayQuality
Bandyopadhyay, Somnath (Som)
- [BioC] marray and limma error with lmFit
Jay Konieczka
- [BioC] how to analyse single chromosome array CGH data using HMM in aCGH library?
Ruppert Valentino
- [BioC] in case you have a visualization paper to submit
Vincent Carey 525-2265
- [BioC] combineAffyBatch problem
Gabor Halasz
- [BioC] expression sets with probe names
Karin Lagesen
- [BioC] Catagories
Lana Schaffer
- [BioC] OSX location of bioconductor functions
James W. MacDonald
- [BioC] Normalizing non-normal array data (experimental sample vs. reference)
Oliver Homann
- [BioC] lmFit broken in limma???
Jay Konieczka
- [BioC] Bioinformatics position at Lawrence Berkeley National Lab
Jeremy Semeiks
- [BioC] marray and limma error with lmFit
Gordon Smyth
- [BioC] OSX location of bioconductor functions
Gordon Smyth
- [BioC] OSX location of bioconductor functions
Gordon Smyth
- [BioC] Looking for strongly correlated gene expression data
Kim, K.I.
- [BioC] Category
Lana Schaffer
- [BioC] Need help to analyze high dimensional data matrix.
E Cell
- [BioC] PLMset and image function
Edwards.Stephen at epamail.epa.gov
- [BioC] Correlation works, but dist() runs out of memory
Daniel Brewer
- [BioC] biomaRt UseMart
Javier Díez
- [BioC] Category/ summery student project
Simon Lin
- [BioC] Builing annotation package with AnnBuilder using gene symbol
Tae-Hoon Chung
- [BioC] Builing annotation package with AnnBuilder using gene symbol
John Zhang
- [BioC] Signal above negative controls in a two-color experiment - limma?
John Fowler
- [BioC] Help with GenePix files
Heike Pospisil
- [BioC] multtest
Ozge Gursoy-Yuzugulu
- [BioC] marray: problems loading genepix-files
Heike Pospisil
- [BioC] plotHist and plotDeg?
Lana Schaffer
- [BioC] Limma time course with two-color microarrays
Sergio Barberan
- [BioC] (no subject)
Mikhail, Amy
- [BioC] Error with the function hyperGtest from GOstats package
Anne.Biton at sanofi-aventis.com
- [BioC] Limma time course with two-color microarrays
Gordon K Smyth
- [BioC] robustspline method for within arrays normalisation
Muller, Pie
- [BioC] Signal above negative controls in a two-color experiment - limma?
Mikhail, Amy
- [BioC] "scale to fit" plot for A4 pdf
Daniel Brewer
- [BioC] AnnBuilder GO url question
Tae-Hoon Chung
- [BioC] sizepower package and block/paired design
Pedro López Romero
- [BioC] Student Intern Position, Summer 2007, Chicago, IL
Simon Lin
- [BioC] superpc - scaling of test set?
Manuela Hummel
- [BioC] Problem with the function hyperGtest from GOstats package
Arne.Muller at sanofi-aventis.com
- [BioC] problem when using "humanCHRLOC"
li lilingdu
- [BioC] aCGH: using T instead of TRUE
Ramon Diaz-Uriarte
- [BioC] justRMA and logarithm transformation
Alexander Richards
- [BioC] snapCGH: T instead of TRUE, etc
Ramon Diaz-Uriarte
- [BioC] Annotation parameter of hyperGTest
Michael Mayhew
- [BioC] problems in boot.phylo()
Nora Muda
- [BioC] Affymetrics porcine arrays
Ingrid H. G. Østensen
- [BioC] shuffling distance matrix
prsmra01 at uniroma2.it
- [BioC] Plot multiple gene profiles on one plot
Daniel Brewer
- [BioC] shuffling distance matrix
Stephen Henderson
- [BioC] methods for determining clusters of correlated genes
knaxerov at ix.urz.uni-heidelberg.de
- [BioC] Plot: expression by location start AND stop
Daniel Brewer
- [BioC] advice on background subtraction/normalization
Jay Konieczka
- [BioC] Failing to install genefilter-1.12.0
Benilton Carvalho
- [BioC] simple MAS5 question
James Anderson
- [BioC] MAS5
James Anderson
- [BioC] globaltest
Caroline Reiff
- [BioC] Statistical significance of clinical information
Daniel Brewer
- [BioC] SemSim GOCount question
ariel at df.uba.ar
- [BioC] advice on background subtraction/normalization
Jean Yee Hwa Yang
- [BioC] Error in biocLite() installation in Mac OS X 10.4
Howard Zhang
- [BioC] problems in boot.phylo function
Nora Muda
- [BioC] boot.phylo( ) function
Nora Muda
- [BioC] Technical replicates in limma
Steve Taylor
- [BioC] Statistical significance of clinical information
Gordon K Smyth
- [BioC] lumi package
Ingrid H. G. Østensen
- [BioC] CGH microarrays significance test
João Fadista
- [BioC] Statistical significance of clinical information
Lana Schaffer
- [BioC] LIMMA P-value calculations/Suggestions for flagged data
Lance E. Palmer
- [BioC] solution of boot.phylo()'s problem
Nora Muda
- [BioC] Error in rowname in lumiR?
Ingrid H. G. Østensen
- [BioC] COURSE: Statistical Microarray Analysis Using R (London Mrr 29th+30th 2007)
North, Bernard V
- [BioC] LIMMA P-value calculations/Suggestions for flagged data
Gordon K Smyth
- [BioC] plotDeg in affycoretools
claire wilson
- [BioC] plotDeg in affycoretools
claire wilson
- [BioC] Error in rowname in lumiR?
Pan Du
- [BioC] Renaming row names (U133A/B joining problem)
Daniel Brewer
- [BioC] ANN:xy2i and i2xy to be deprecated
James MacDonald
- [BioC] Nimblegen arrays/Limma package:duplicate correlation and other problems
r.athanasiadou
- [BioC] exonmap install
Dick Beyer
- [BioC] affy u133x3p chip
Dick Beyer
- [BioC] LIMMA P-value calculations/Suggestions for flagged data
Sergio Barberan
- [BioC] LIMMA P-value calculations/Suggestions for flagged data
Gordon K Smyth
- [BioC] Annotating HGU133plus2 genes with number of coding changes
marco zucchelli
- [BioC] Combining arrays arrays from different tissues and different labs.
marco zucchelli
- [BioC] Error in RankProd package
Marcus Davy
- [BioC] maQualityPlots (arrayQuality package)
João Fadista
- [BioC] Nimblegen arrays/Limma package:duplicate correlation and other problems
r.athanasiadou
- [BioC] error with timecourse package
Ana Conesa
- [BioC] suggestion about a split-plot factorial design with limma
Naomi Altman
- [BioC] topTable "resort.by" broken...
Jenny Drnevich
- [BioC] HyperGTest error question
Vivek Kaimal
- [BioC] question about limma2annaffy
Jenny Drnevich
- [BioC] Memory error wihle processing 35 Affymetrix cel files
Höning, Gunther
- [BioC] posting to bioconductor
RS Illingworth
- [BioC] bioc-announce: vsn 2
Wolfgang Huber
- [BioC] Tutorials and Free Software Session at CompLife 2007
Thorsten Meinl
- [BioC] Format NCprobe index file gcrma
Hans van Leeuwen
- [BioC] hgu133plus2 normalization
Bin Zheng
- [BioC] eBayes in LIMMA: borrowing which info?
Hooiveld, Guido
- [BioC] BioC 2007
Robert Gentleman
- [BioC] biomaRt manual
Weiwei Shi
- [BioC] gramene
Javier Díez
- [BioC] BioConductor Developer Workshop Program
Darlene Goldstein
- [BioC] SemSim package - linux distribution
Tim Smith
- [BioC] Very odd error while using globaltest()
Tae-Hoon Chung
- [BioC] Failed to obtain KEGG organism code
Tae-Hoon Chung
- [BioC] Average over probes that share the same clone ID in an expression matrix
Daniel Brewer
- [BioC] matrix row/column displayed as a list
Daniel Brewer
- [BioC] matrix row/column displayed as a list
Daniel Brewer
- [BioC] looking for Affy 500k snp chip data
Mike Cariaso
- [BioC] questions about siggenes
Yanqin Yang
- [BioC] "AveExp" column has dissappeared from limma topTable
Mikhail, Amy
Last message date:
Sat Mar 31 14:50:02 CEST 2007
Archived on: Sat Mar 31 14:50:15 CEST 2007
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